RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 AGPAT4Q9NRZ5 378 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 RHBDL2Q9NX52 303 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 ACTR3BQ9P1U1 418 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 BRCA1P38398 1863 aaKnown RBP16.35■□□□□ 0.21
SHMT2-231ENST00000557433 A0A1B0GTW7 788 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 DHRS12A0PJE2 317 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 ZNF839A8K0R7 811 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 SOCS2O14508 198 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 TIPRLO75663 272 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 PAPSS2O95340 614 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-231ENST00000557433 FGFR3P22607 806 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 HOXC13P31276 330 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 GRIA3P42263 894 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 TBCELQ5QJ74 424 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 GJC2Q5T442 439 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-231ENST00000557433 TMTC4Q5T4D3 741 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 FAM35AQ86V20 835 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 CLYBLQ8N0X4 340 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 SMYD1Q8NB12 490 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 PNPT1Q8TCS8 783 aaKnown RBP16.35■□□□□ 0.21
SHMT2-231ENST00000557433 CANT1Q8WVQ1 401 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 SEPT8Q92599 483 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 SGF29Q96ES7 293 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 OTUD5Q96G74 571 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 VPS50Q96JG6 964 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 ADI1Q9BV57 179 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 FSD1LQ9BXM9 530 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 PDGFDQ9GZP0 370 aaPredicted RBP16.35■□□□□ 0.21
SHMT2-231ENST00000557433 GSTO2Q9H4Y5 243 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 CATSPERBQ9H7T0 1116 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 ARNT2Q9HBZ2 717 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 TMEM9Q9P0T7 183 aa16.35■□□□□ 0.21
SHMT2-231ENST00000557433 SNAP91O60641 907 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 MMP3P08254 477 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 FGF4P08620 206 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 GPX3P22352 226 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 SOX4Q06945 474 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-231ENST00000557433 MERTKQ12866 999 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 SPIDRQ14159 915 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 ATP6AP1Q15904 470 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 SLC36A3Q495N2 470 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 WSCD1Q658N2 575 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 RANBP10Q6VN20 620 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 PATL1Q86TB9 770 aaKnown RBP16.34■□□□□ 0.21
SHMT2-231ENST00000557433 CLVS1Q8IUQ0 354 aaPredicted RBP16.34■□□□□ 0.21
SHMT2-231ENST00000557433 SPATA22Q8NHS9 363 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 C19orf60Q96EN9 201 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 SMOQ99835 787 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 TUBA1CQ9BQE3 449 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 FNIP2Q9P278 1114 aa16.34■□□□□ 0.21
SHMT2-231ENST00000557433 CCDC78A2IDD5 438 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 VPS4BO75351 444 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 RASAL1O95294 804 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 MATN4O95460 622 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 CKMT2P17540 419 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 BRMS1LQ5PSV4 323 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 SPRED1Q7Z699 444 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 PTAR1Q7Z6K3 402 aaPredicted RBP16.33■□□□□ 0.21
SHMT2-231ENST00000557433 SPATA6LQ8N4H0 392 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 TBC1D23Q9NUY8 699 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 GINS2Q9Y248 185 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 FIS1Q9Y3D6 152 aa16.33■□□□□ 0.21
SHMT2-231ENST00000557433 TANC1Q9C0D5 1861 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 COL4A4P53420 1690 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 OTOFQ9HC10 1997 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 hCG_2014768A0A024R1R8 64 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 TYW5A2RUC4 315 aaKnown RBP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 NEMP2A6NFY4 417 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 HNRNPCP07910 306 aaKnown RBP eCLIP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 USP17L7P0C7H9 530 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 UMPSP11172 480 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 ATP6V1B2P21281 511 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 DCKP27707 260 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 PLOD1Q02809 727 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 PPP1R3AQ16821 1122 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 ZNF678Q5SXM1 525 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 ABRAXAS1Q6UWZ7 409 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 MIER2Q8N344 545 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 ZNF786Q8N393 782 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 CBR4Q8N4T8 237 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 LEMD2Q8NC56 503 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 USP33Q8TEY7 942 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 BORCS5Q969J3 196 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 ABTB1Q969K4 478 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 SMARCD1Q96GM5 515 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 CELF6Q96J87 481 aaKnown RBP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 MYRFLQ96LU7 910 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 OSMRQ99650 979 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 FAM49AQ9H0Q0 323 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 ELP3Q9H9T3 547 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 CYP4F12Q9HCS2 524 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 PALMDQ9NP74 551 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 CRTAC1Q9NQ79 661 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 SMOXQ9NWM0 555 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 KLK14Q9P0G3 267 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 CDH9Q9ULB4 789 aa16.33■□□□□ 0.2
SHMT2-231ENST00000557433 PIN4Q9Y237 131 aaKnown RBP16.33■□□□□ 0.2
SHMT2-231ENST00000557433 A0A0J9YYE9 177 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 TRIM64BA6NI03 449 aa16.32■□□□□ 0.2
SHMT2-231ENST00000557433 DFFAO00273 331 aa16.32■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms