RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 DOPEY1Q5JWR5 2465 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 ABCA12Q86UK0 2595 aa12.69□□□□□ -0.38
SHMT2-230ENST00000557427 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 ZSCAN5CA6NGD5 496 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 TTC34A8MYJ7 566 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 RNASEH1O60930 286 aaKnown RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 F9P00740 461 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 THEGLP0DJG4 465 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 SFTPCP11686 197 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 WT1P19544 449 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 MZF1P28698 734 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 PSMD8P48556 350 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 IRAK1P51617 712 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 PDX1P52945 283 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 GSCP56915 257 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 ATP11AP98196 1134 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 SFSWAPQ12872 951 aaKnown RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 OVGP1Q12889 678 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 ZNF177Q13360 481 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 SKIDA1Q1XH10 827 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 POM121L1PQ3SYA9 428 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 ALS2CLQ60I27 953 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 CPNE8Q86YQ8 564 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 RHOT1Q8IXI2 618 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 FAM26EQ8N5C1 309 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 RXFP2Q8WXD0 754 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 NT5C3BQ969T7 300 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 FAM131CQ96AQ9 280 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 ARRDC3Q96B67 414 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 CFAP57Q96MR6 1250 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 METTL5Q9NRN9 209 aaKnown RBP12.68□□□□□ -0.38
SHMT2-230ENST00000557427 KLHL11Q9NVR0 708 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 WDR70Q9NW82 654 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 AMACRQ9UHK6 382 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 NFU1Q9UMS0 254 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 SRPK3Q9UPE1 567 aa12.68□□□□□ -0.38
SHMT2-230ENST00000557427 SPENQ96T58 3664 aaKnown RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 TMEM191CA6NGB0 347 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 H3BQF6 201 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 K7ESM1 405 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 PPFIA2O75334 1257 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 NEBLO76041 1014 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 CNTN5O94779 1100 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 ASLP04424 464 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 SCNN1AP37088 669 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 DRG2P55039 364 aaKnown RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 INHBCP55103 352 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 CYP4F2P78329 520 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 ECT2LQ008S8 904 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 DR1Q01658 176 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 STAT4Q14765 748 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 SIX1Q15475 284 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 CDO1Q16878 200 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 RAB6CQ53S08 254 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 HSP90B2PQ58FF3 399 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 PPP1R15BQ5SWA1 713 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 RNF219Q5W0B1 726 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 TRNP1Q6NT89 227 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 AADACL2Q6P093 401 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 CRTC1Q6UUV9 634 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 PRPF39Q86UA1 669 aaKnown RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 ARL14Q8N4G2 192 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 PRELID2Q8N945 189 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 C3orf20Q8ND61 904 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 HTR3CQ8WXA8 447 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 IFT81Q8WYA0 676 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 GRAMD1AQ96CP6 724 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 KLHDC7BQ96G42 594 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 TRIM7Q9C029 511 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 RAB6CQ9H0N0 254 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 GEMIN8Q9NWZ8 242 aaKnown RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 ARHGEF38Q9NXL2 777 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 NLGN3Q9NZ94 848 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 PCYOX1Q9UHG3 505 aa12.67□□□□□ -0.38
SHMT2-230ENST00000557427 TPX2Q9ULW0 747 aaKnown RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 UTP11Q9Y3A2 253 aaKnown RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 SPTBN1Q01082 2364 aaKnown RBP12.67□□□□□ -0.38
SHMT2-230ENST00000557427 ESYT3A0FGR9 886 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 TCAF2A6NFQ2 919 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 I6L893 689 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-230ENST00000557427 TTI1O43156 1089 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 MAGEC1O60732 1142 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 ITGA2BP08514 1039 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 C5AR1P21730 350 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 ECHS1P30084 290 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 PTGIRP43119 386 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 FNTAP49354 379 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 STK19P49842 368 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-230ENST00000557427 MTA1Q13330 715 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 CDKN3Q16667 212 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 C15orf59Q2T9L4 293 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-230ENST00000557427 CCDC14Q49A88 953 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 ACCSLQ4AC99 568 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 BRMS1LQ5PSV4 323 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 LRRC38Q5VT99 294 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 TTC39BQ5VTQ0 682 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-230ENST00000557427 DNAJC24Q6P3W2 148 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 GUSBP11Q6P575 273 aa12.66□□□□□ -0.38
SHMT2-230ENST00000557427 LRRC31Q6UY01 552 aa12.66□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms