RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 HIST1H2ADP20671 130 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 GRK3P35626 688 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ARL2P36404 184 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 IL12RB1P42701 662 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 SLC1A2P43004 574 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ECT2LQ008S8 904 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 RAB39AQ14964 217 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 TMEM132BQ14DG7 1078 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 SLC15A2Q16348 729 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 INSCQ1MX18 579 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 C11orf91Q3C1V1 193 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 CELF3Q5SZQ8 465 aaKnown RBP5□□□□□ -1.61
SYNE2-223ENST00000557005 C1orf220Q5T0J3 134 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 FOXB2Q5VYV0 432 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 EEF1DP3Q658K8 133 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 MAP1SQ66K74 1059 aaPredicted RBP5□□□□□ -1.61
SYNE2-223ENST00000557005 TMEM110Q86TL2 294 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 GPSM1Q86YR5 675 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 MIB1Q86YT6 1006 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 DENND6AQ8IWF6 608 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 PDPRQ8NCN5 879 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 SETD9Q8NE22 299 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 PCDH19Q8TAB3 1148 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 C17orf50Q8WW18 174 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 DNAJB3Q8WWF6 145 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ASZ1Q8WWH4 475 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ZHX1-C8orf76Q96EF9 292 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 HIST1H2AHQ96KK5 128 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 HIST1H2AJQ99878 128 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 H2AFJQ9BTM1 129 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 TRIM54Q9BYV2 358 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 RHOBTB2Q9BYZ6 727 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 UNC93B1Q9H1C4 597 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ZFP14Q9HCL3 533 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 SLC38A7Q9NVC3 462 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 OXSMQ9NWU1 459 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 TOR4AQ9NXH8 423 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ADGRE2Q9UHX3 823 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 GNPTGQ9UJJ9 305 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 LEF1Q9UJU2 399 aaPredicted RBP5□□□□□ -1.61
SYNE2-223ENST00000557005 ZNF221Q9UK13 617 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 KLHL20Q9Y2M5 609 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 PMF1-BGLAPU3KQ54 211 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 DOCK2Q92608 1830 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 USP54Q70EL1 1684 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 KIAA1551Q9HCM1 1747 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 H3BNX3 289 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 AZIN1O14977 448 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 RGS14O43566 566 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 SLC22A3O75751 556 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 PTPN3P26045 913 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 L1CAMP32004 1257 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 KPNA1P52294 538 aaPredicted RBP5□□□□□ -1.61
SYNE2-223ENST00000557005 PPP1R3AQ16821 1122 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 RAB6CQ53S08 254 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 NOMO2Q5JPE7 1267 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 WSCD1Q658N2 575 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 RELL1Q8IUW5 271 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 SLC44A2Q8IWA5 706 aaPredicted RBP5□□□□□ -1.61
SYNE2-223ENST00000557005 B3GALNT2Q8NCR0 500 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 MFSD3Q96ES6 412 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 TEX12Q9BXU0 123 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 PRRG3Q9BZD7 231 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 CEP44Q9C0F1 390 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 RAB6CQ9H0N0 254 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 PRDM12Q9H4Q4 367 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ALG2Q9H553 416 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 EPS8L2Q9H6S3 715 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 CRLS1Q9UJA2 301 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 WDR37Q9Y2I8 494 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 FARP1Q9Y4F1 1045 aaPredicted RBP5□□□□□ -1.61
SYNE2-223ENST00000557005 TIMM22Q9Y584 194 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 ST14Q9Y5Y6 855 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 GMEB1Q9Y692 573 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 SQORQ9Y6N5 450 aa5□□□□□ -1.61
SYNE2-223ENST00000557005 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP4.99□□□□□ -1.61
SYNE2-223ENST00000557005 C2CD4BA6NLJ0 364 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 HCRTO43612 131 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 RFPL1O75677 317 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 ANXA6P08133 673 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 FGFR1P11362 822 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 BDNFP23560 247 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 MAPK1P28482 360 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 RRM2P31350 389 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 ST13P50502 369 aaKnown RBP4.99□□□□□ -1.61
SYNE2-223ENST00000557005 CDH13P55290 713 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 OXCT1P55809 520 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 EN1Q05925 392 aaPredicted RBP4.99□□□□□ -1.61
SYNE2-223ENST00000557005 MBTD1Q05BQ5 628 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 MERTKQ12866 999 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 KRT33BQ14525 404 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 TREML2Q5T2D2 321 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 CCNYL2Q5T2Q4 361 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 TRIQKQ629K1 86 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 CDHR3Q6ZTQ4 885 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 THAP5Q7Z6K1 395 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 FAM35AQ86V20 835 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 SLC22A16Q86VW1 577 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 HIPK1Q86Z02 1210 aa4.99□□□□□ -1.61
SYNE2-223ENST00000557005 ADHFE1Q8IWW8 467 aa4.99□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms