RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 RANBP9Q96S59 729 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 NDNQ99608 321 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 SLC25A23Q9BV35 468 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 ATXN3LQ9H3M9 355 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 MEAF6Q9HAF1 191 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 ZFYVE28Q9HCC9 887 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 SPAG4Q9NPE6 437 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 NMRK2Q9NPI5 230 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 VPS45Q9NRW7 570 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 IGSF5Q9NSI5 407 aa7.04□□□□□ -1.28
TDP1-213ENST00000555880 CNOT11Q9UKZ1 510 aaKnown RBP7.04□□□□□ -1.28
TDP1-213ENST00000555880 PRSS51A0A1B0GVH4 220 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 A8MT66 165 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 STX16-NPEPL1H3BU86 382 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 SRP72O76094 671 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 PAPSS2O95340 614 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SNRPB2P08579 225 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SLC26A3P40879 764 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 AFF1P51825 1210 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SLC5A3P53794 718 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 ATXN3P54252 364 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 PRAMEP78395 509 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 MS4A2Q01362 244 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 NRG1Q02297 640 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 GALNT1Q10472 559 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SREBF2Q12772 1141 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 TRAP1Q12931 704 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 LAMB3Q13751 1172 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 ADRM1Q16186 407 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 PAN2Q504Q3 1202 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 AGKQ53H12 422 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 SAMD4BQ5PRF9 694 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 RBM20Q5T481 1227 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 MARC1Q5VT66 337 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 AFMIDQ63HM1 303 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 AGMOQ6ZNB7 445 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 EP400NLQ6ZTU2 488 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 CHSY3Q70JA7 882 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 RAB44Q7Z6P3 723 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 CUZD1Q86UP6 607 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 SATL1Q86VE3 508 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 ZNF354CQ86Y25 554 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 RASAL3Q86YV0 1011 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 PELI3Q8N2H9 469 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 GALNT4Q8N4A0 578 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 OR6P1Q8NGX9 317 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 SPPL2BQ8TCT7 592 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 DDI1Q8WTU0 396 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 DGCR14Q96DF8 476 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 ZNF419Q96HQ0 510 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SPSB2Q99619 263 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 PKP2Q99959 881 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 RTP3Q9BQQ7 232 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 PAAF1Q9BRP4 392 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 MTG1Q9BT17 334 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SENP6Q9GZR1 1112 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 UPF3AQ9H1J1 476 aaKnown RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SUDS3Q9H7L9 328 aaPredicted RBP7.03□□□□□ -1.28
TDP1-213ENST00000555880 SP110Q9HB58 689 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 ARNT2Q9HBZ2 717 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 NT5MQ9NPB1 228 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 MIOSQ9NXC5 875 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 CACNA2D2Q9NY47 1150 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 FLRT1Q9NZU1 646 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 THEGQ9P2T0 379 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 SFMBT1Q9UHJ3 866 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 AP4S1Q9Y587 144 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 TRPM7Q96QT4 1865 aa7.03□□□□□ -1.28
TDP1-213ENST00000555880 ARHGAP10A1A4S6 786 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 NEMP2A6NFY4 417 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 CCDC160A6NGH7 325 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 H0YJX3 145 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 M0QZQ0 153 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 ACOT8O14734 319 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 MRASO14807 208 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 SLC7A4O43246 635 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 RTN3O95197 1032 aaPredicted RBP7.02□□□□□ -1.28
TDP1-213ENST00000555880 PGM3O95394 542 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 POMCP01189 267 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 PENKP01210 267 aaPredicted RBP7.02□□□□□ -1.28
TDP1-213ENST00000555880 C8BP07358 591 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 CD1EP15812 388 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 HOXB8P17481 243 aaPredicted RBP7.02□□□□□ -1.28
TDP1-213ENST00000555880 PSMC3P17980 439 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 CD86P42081 329 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 DPP6P42658 865 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 BRCC3P46736 316 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 PSMD8P48556 350 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 NDST2P52849 883 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 TUSC3Q13454 348 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 EIF4EBP2Q13542 120 aaPredicted RBP7.02□□□□□ -1.28
TDP1-213ENST00000555880 LARP7Q4G0J3 582 aaKnown RBP eCLIP7.02□□□□□ -1.28
TDP1-213ENST00000555880 HECTD2Q5U5R9 776 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 REP15Q6BDI9 236 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 KDELC1Q6UW63 502 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 MRPL10Q7Z7H8 261 aaKnown RBP7.02□□□□□ -1.28
TDP1-213ENST00000555880 CILP2Q8IUL8 1156 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 UMODL1-AS1Q8N2C9 162 aa7.02□□□□□ -1.28
TDP1-213ENST00000555880 PCDH20Q8N6Y1 951 aaKnown RBP7.02□□□□□ -1.28
TDP1-213ENST00000555880 PCYOX1LQ8NBM8 494 aa7.02□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms