RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 AP1B1Q10567 949 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 PDE1CQ14123 709 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 TFDP2Q14188 446 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 IHHQ14623 411 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 PDK1Q15118 436 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 TPRG1LQ5T0D9 272 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 ARMC12Q5T9G4 340 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 B4GALNT4Q76KP1 1039 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 KANSL1Q7Z3B3 1105 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 GLRX5Q86SX6 157 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 LRRC57Q8N9N7 239 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 EXD1Q8NHP7 514 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 ARRDC2Q8TBH0 407 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 RHBDD1Q8TEB9 315 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 CALR3Q96L12 384 aaKnown RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 CEP41Q9BYV8 373 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 HAUS2Q9NVX0 235 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 SAE1Q9UBE0 346 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-219ENST00000555563 RAI2Q9Y5P3 530 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 ZFHX4Q86UP3 3567 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 KNL1Q8NG31 2342 aa13.79□□□□□ -0.2
SHMT2-219ENST00000555563 EPG5Q9HCE0 2579 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 SPTY2D1-AS1A0A0U1RR47 76 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 A8MX80 341 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 LZTS3O60299 673 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-219ENST00000555563 JCHAINP01591 159 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 PDHA1P08559 390 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 TGM2P21980 687 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 LHCGRP22888 699 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 BNIP3Q12983 259 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 FZD2Q14332 565 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 LRRC14Q15048 493 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 WSCD2Q2TBF2 565 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 ZNF542PQ5EBM4 170 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 FAM182AQ5T1J6 154 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 LIPIQ6XZB0 460 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 PARGQ86W56 976 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 DCP2Q8IU60 420 aaKnown RBP13.78□□□□□ -0.2
SHMT2-219ENST00000555563 RCOR2Q8IZ40 523 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 CNTD1Q8N815 330 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 KIAA1524Q8TCG1 905 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 HAUS1Q96CS2 278 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 IL12RB2Q99665 862 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 CDC6Q99741 560 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 TDRD1Q9BXT4 1180 aaKnown RBP13.78□□□□□ -0.2
SHMT2-219ENST00000555563 DNAJC28Q9NX36 388 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 SEPT10Q9P0V9 454 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 PHTF1Q9UMS5 762 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 PCDHA3Q9Y5H8 950 aa13.78□□□□□ -0.2
SHMT2-219ENST00000555563 CFAP69A5D8W1 941 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 NPIPB15A6NHN6 443 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-219ENST00000555563 ACACBO00763 2458 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 FZD6O60353 706 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 PIAS2O75928 621 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 RECQL5O94762 991 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-219ENST00000555563 PCCBP05166 539 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 FTH1P19P0C7X4 201 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 CTPS1P17812 591 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 GM2AP17900 193 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 CTNNA2P26232 953 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 VIPR1P32241 457 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 NR2C2P49116 596 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 KIF5AQ12840 1032 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 FOXC1Q12948 553 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 AGERQ15109 404 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 PRKD1Q15139 912 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-219ENST00000555563 PTPRRQ15256 657 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 CNGA3Q16281 694 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 PPP2R5EQ16537 467 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 USP45Q70EL2 814 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 TXLNBQ8N3L3 684 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 PIH1D2Q8WWB5 315 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 ALG3Q92685 438 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 IFT43Q96FT9 208 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 MCCC1Q96RQ3 725 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-219ENST00000555563 HERPUD2Q9BSE4 406 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 BRD8Q9H0E9 1235 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 UCKL1Q9NWZ5 548 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 FTSJ1Q9UET6 329 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 ANGPTL2Q9UKU9 493 aa13.77□□□□□ -0.21
SHMT2-219ENST00000555563 KMT2BQ9UMN6 2715 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-219ENST00000555563 CABIN1Q9Y6J0 2220 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 PCNX2A6NKB5 2137 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 CCDC66A2RUB6 948 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 GOLGA8CPA6NN73 597 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 HEXIM1O94992 359 aaKnown RBP13.76□□□□□ -0.21
SHMT2-219ENST00000555563 TOP3BO95985 862 aaKnown RBP13.76□□□□□ -0.21
SHMT2-219ENST00000555563 MMP2P08253 660 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 ALPIP09923 528 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 ATXN1LP0C7T5 689 aaKnown RBP13.76□□□□□ -0.21
SHMT2-219ENST00000555563 CYP2A6P11509 494 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-219ENST00000555563 NME1P15531 152 aaKnown RBP13.76□□□□□ -0.21
SHMT2-219ENST00000555563 CES1P23141 567 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 CD86P42081 329 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 THOP1P52888 689 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 EIF2B5Q13144 721 aaKnown RBP13.76□□□□□ -0.21
SHMT2-219ENST00000555563 ACOX1Q15067 660 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 BBS12Q6ZW61 710 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 TSPAN33Q86UF1 283 aa13.76□□□□□ -0.21
SHMT2-219ENST00000555563 NT5DC3Q86UY8 548 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms