RNA–Protein interactions for RNA: ENST00000552720.5

LIMA1-213, Transcript of LIM domain and actin binding 1, humanhuman

TSL 1 (best)

Gene LIMA1, Length 2,457 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-213ENST00000552720 CARNS1A5YM72 827 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 ANKRD33BA6NCL7 494 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 H3BSA7 217 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 AP3B1O00203 1094 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 MGEA5O60502 916 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CNTN5O94779 1100 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 SUPT7LO94864 414 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 SIX3O95343 332 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PEX11BO96011 259 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CHRNA1P02708 482 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CAPNS1P04632 268 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 LTA4HP09960 611 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 ALDOCP09972 364 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 FAM58BPP0C7Q3 252 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CKMT2P17540 419 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PCSK1P29120 753 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 RPS6KA3P51812 740 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 INHBCP55103 352 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 FOXA1P55317 472 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 DNAJB13P59910 316 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 RPL26P61254 145 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 MRPS6P82932 125 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CAMK2BQ13554 666 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 LAMB3Q13751 1172 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 FAM110CQ1W6H9 321 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 FAM83EQ2M2I3 478 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 C6orf10Q5SRN2 563 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 HECTD2Q5U5R9 776 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PIK3R6Q5UE93 754 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 LCA5Q86VQ0 697 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 FUNDC1Q8IVP5 155 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 HERC6Q8IVU3 1022 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 AHI1Q8N157 1196 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 RYBPQ8N488 228 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 OR6P1Q8NGX9 317 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 IRGQQ8WZA9 623 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 DLG3Q92796 817 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 TMIGD2Q96BF3 282 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PTERQ96BW5 349 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 DGCR14Q96DF8 476 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CCDC97Q96F63 343 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PHF12Q96QT6 1004 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 TSPAN18Q96SJ8 248 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PKMYT1Q99640 499 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 SLC2A11Q9BYW1 496 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 UNC93B1Q9H1C4 597 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 NOL11Q9H8H0 719 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 MEAF6Q9HAF1 191 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CAMSAP3Q9P1Y5 1249 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 AP4S1Q9Y587 144 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 A0A1W2PQH9 124 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 ZNF839A8K0R7 811 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 MRASO14807 208 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 GPC4O75487 556 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 TIPRLO75663 272 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 TNFAIP8O95379 198 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 MMP2P08253 660 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PIRTP0C851 137 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PRSS56P0CW18 603 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PAMP19021 973 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 UGT1A6P19224 532 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CHRM3P20309 590 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 DNAJB2P25686 324 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CCR1P32246 355 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 ETFBP38117 255 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 GRIK1P39086 918 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 GPR15P49685 360 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 SLC7A2P52569 658 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PURAQ00577 322 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 ZNF33AQ06730 810 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 DYNC1I2Q13409 638 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 APOFQ13790 326 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 IKBKEQ14164 716 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 SQLEQ14534 574 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 FSCN1Q16658 493 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 ALFQ53S48 1182 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 GDF6Q6KF10 455 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 RETREG3Q86VR2 466 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CHERPQ8IWX8 916 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 RTL3Q8N8U3 475 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 HDAC10Q969S8 669 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 PABPC5Q96DU9 382 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 HMCESQ96FZ2 354 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 RPL10LQ96L21 214 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 UBXN10Q96LJ8 280 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 KCNA7Q96RP8 456 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 Q9H521 79 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 CATSPERBQ9H7T0 1116 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 EPS15L1Q9UBC2 864 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 SUCOQ9UBS9 1254 aaKnown RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 DSEQ9UL01 958 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 TRAF6Q9Y4K3 522 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 ARIH1Q9Y4X5 557 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 HEMK1Q9Y5R4 338 aaPredicted RBP7.53□□□□□ -1.2
LIMA1-213ENST00000552720 SCN10AQ9Y5Y9 1956 aa7.53□□□□□ -1.2
LIMA1-213ENST00000552720 A0A1B0GTL3 188 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 HEATR9A2RTY3 570 aa7.52□□□□□ -1.21
LIMA1-213ENST00000552720 ZNF189O75820 626 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-213ENST00000552720 C8BP07358 591 aa7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms