RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PTPN13Q12923 2485 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 A0A087X1B8 175 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SLC38A8A6NNN8 435 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 GOLGA6L6A8MZA4 724 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 DIRC3C9JPN6 131 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF213O14771 459 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 TULP3O75386 442 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SUN1O94901 812 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 KCNK5O95279 499 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 CD72P21854 359 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 FGFR4P22455 802 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MMP8P22894 467 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 PSMA4P25789 261 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 HOXC13P31276 330 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MLH1P40692 756 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 PNPLA4P41247 253 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SUMO2P61956 95 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MC2RQ01718 297 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 LRMPQ12912 555 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SRSF5Q13243 272 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 DCTN2Q13561 401 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 HLXQ14774 488 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 NAA25Q14CX7 972 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SF3A2Q15428 464 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ALDH1L2Q3SY69 923 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 CD300EQ496F6 205 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 DCAF17Q5H9S7 520 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 CBWD5Q5RIA9 395 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 RARS2Q5T160 578 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 PLPP4Q5VZY2 271 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ARMC3Q5W041 872 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 CCDC144NLQ6NUI1 221 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MSANTD2Q6P1R3 559 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM184AQ6ZMB5 413 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 TMEM179Q6ZVK1 233 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MICALCLQ6ZW33 695 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF627Q7L945 461 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SGMS1Q86VZ5 419 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 IZUMO1Q8IYV9 350 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 GPR135Q8IZ08 494 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 C17orf53Q8N3J3 647 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 B3GALNT2Q8NCR0 500 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 OR52N2Q8NGI0 321 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SUN3Q8TAQ9 357 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ZCCHC10Q8TBK6 192 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 METTL6Q8TCB7 284 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 OVCA2Q8WZ82 227 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SEPT8Q92599 483 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 LARP4BQ92615 738 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SECISBP2LQ93073 1101 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SH3KBP1Q96B97 665 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 FAM136AQ96C01 138 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF689Q96CS4 500 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 CNDP2Q96KP4 475 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ZSWIM1Q9BR11 485 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MECRQ9BV79 373 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 CLPBQ9H078 707 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 GHITMQ9H3K2 345 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SMARCAD1Q9H4L7 1026 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SLC38A10Q9HBR0 1119 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SH3GLB2Q9NR46 395 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SLC2A4RGQ9NR83 387 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 PPP1R14DQ9NXH3 145 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 VPS51Q9UID3 782 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ZNF215Q9UL58 517 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 DRG1Q9Y295 367 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 REXO2Q9Y3B8 237 aaKnown RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 PCDHB7Q9Y5E2 793 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 PCDHA10Q9Y5I2 948 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 ENTPD2Q9Y5L3 495 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MAGED1Q9Y5V3 778 aaPredicted RBP3.99□□□□□ -1.77
LIMA1-208ENST00000551691 SNX14Q9Y5W7 946 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 MYH1P12882 1939 aa3.99□□□□□ -1.77
LIMA1-208ENST00000551691 PDS5AQ29RF7 1337 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ADGRA3Q8IWK6 1321 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 TRGV11A0A075B6L2 103 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 NBPF19A0A087WUL8 3843 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PRAMEF33A0A0G2JMD5 474 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 hCG_1807616A0A1W2PRN6 198 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 AGAP5A6NIR3 686 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 MBD3L5A6NJ08 208 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 EIF4E1BA6NMX2 242 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 CAPN14A8MX76 684 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PTGES3LE9PB15 166 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 F5H6K3 240 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 CCNT1O60563 726 aaKnown RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PRAMEF10O60809 474 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DKC1O60832 514 aaKnown RBP eCLIP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 C1QL1O75973 258 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 CIAO1O76071 339 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 F9P00740 461 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 DNTTP04053 509 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 VDRP11473 427 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PLA2G2AP14555 144 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 ACRV1P26436 265 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 PBX1P40424 430 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 IL15P40933 162 aaPredicted RBP3.98□□□□□ -1.77
LIMA1-208ENST00000551691 CPA2P48052 419 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 LMAN1P49257 510 aa3.98□□□□□ -1.77
LIMA1-208ENST00000551691 TOB1P50616 345 aaPredicted RBP3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms