RNA–Protein interactions for RNA: ENST00000541342.2

SPIDR-227, Transcript of scaffold protein involved in DNA repair, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SPIDR, Length 3,311 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPIDR-227ENST00000541342 SOD2P04179 222 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 THRAP10827 490 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 KIAA1841Q6NSI8 718 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 KLHDC8BQ8IXV7 354 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 LSMEM2Q8N112 164 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 RNF148Q8N7C7 305 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 NUF2Q9BZD4 464 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 ZYG11BQ9C0D3 744 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 VCX3AQ9NNX9 186 aa17.27■□□□□ 0.36
SPIDR-227ENST00000541342 KIAA1671Q9BY89 1806 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 MYLKQ15746 1914 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 MYOCOSA0A1B0GUC4 107 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 RFC2P35250 354 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 GRIA4P48058 902 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 ADGRE1Q14246 886 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 NADSYN1Q6IA69 706 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 CPSF7Q8N684 471 aaKnown RBP17.27■□□□□ 0.35
SPIDR-227ENST00000541342 NMD3Q96D46 503 aaKnown RBP17.27■□□□□ 0.35
SPIDR-227ENST00000541342 MARK4Q96L34 752 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 RAP2CQ9Y3L5 183 aa17.27■□□□□ 0.35
SPIDR-227ENST00000541342 ERI2A8K979 691 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 GJA8P48165 433 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 KCNQ1P51787 676 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 MYBPC1Q00872 1141 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 MPP3Q13368 585 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 FLOT2Q14254 428 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 GRM3Q14832 879 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 PABPC1LQ4VXU2 614 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 KCNMB4Q86W47 210 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 SLC39A11Q8N1S5 342 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 UMODL1-AS1Q8N2C9 162 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 RNF217Q8TC41 542 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 USP13Q92995 863 aaPredicted RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 TMEM248Q9NWD8 314 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 VPS28Q9UK41 221 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 ABHD14A-ACY1A0A1B0GW23 586 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 ATP9BO43861 1147 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 ABLIM3O94929 683 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 PIGNO95427 931 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 MT-CYBP00156 380 aaPredicted RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 RHOQP17081 205 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 TFEBP19484 476 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 RPL14P50914 215 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 SEL1L3Q68CR1 1132 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 PAOXQ6QHF9 649 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 ZYG11AQ6WRX3 759 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 BNC2Q6ZN30 1099 aaPredicted RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 CIR1Q86X95 450 aaPredicted RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 KLHL32Q96NJ5 620 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 RBM38Q9H0Z9 239 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 AFF4Q9UHB7 1163 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 PEX11BO96011 259 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 CAPNS1P04632 268 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 HLA-DQB2P05538 268 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 HMGA1P17096 107 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 TPH1P17752 444 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 PPARGP37231 505 aaPredicted RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 TUFMP49411 452 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 CDKL1Q00532 357 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 RING1Q06587 406 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 CNGA3Q16281 694 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 DNAAF3Q8N9W5 541 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 RP9Q8TA86 221 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 HMCESQ96FZ2 354 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 C11orf49Q9H6J7 331 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 COPS7BQ9H9Q2 264 aaPredicted RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 IARS2Q9NSE4 1012 aaKnown RBP17.26■□□□□ 0.35
SPIDR-227ENST00000541342 BFARQ9NZS9 450 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 SLC39A10Q9ULF5 831 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 LAMA3Q16787 3333 aa17.26■□□□□ 0.35
SPIDR-227ENST00000541342 TARM1B6A8C7 271 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 TIMP1P01033 207 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 NMBRP28336 390 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 WDR5P61964 334 aaKnown RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 LIPMQ5VYY2 423 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 C16orf89Q6UX73 402 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 ARHGAP22Q7Z5H3 698 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 ZNF461Q8TAF7 563 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 PIP4K2CQ8TBX8 421 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 ZNF558Q96NG5 402 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 CATSPER2Q96P56 530 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 C20orf96Q9NUD7 363 aaPredicted RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 IPO11Q9UI26 975 aaKnown RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 AP4B1Q9Y6B7 739 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 PHGDHO43175 533 aaKnown RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 H2AFYO75367 372 aaKnown RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 GJB5O95377 273 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 SLC35E2BP0CK96 405 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 GABRB3P28472 473 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 GLRBP48167 497 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 ATXN3P54252 364 aaPredicted RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 CYLC2Q14093 348 aaPredicted RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 CENPLQ8N0S6 344 aaPredicted RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 BHLHE22Q8NFJ8 381 aaPredicted RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 EZH1Q92800 747 aaPredicted RBP17.25■□□□□ 0.35
SPIDR-227ENST00000541342 GPR22Q99680 433 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 PKP2Q99959 881 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 TASP1Q9H6P5 420 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 GLOD4Q9HC38 313 aa17.25■□□□□ 0.35
SPIDR-227ENST00000541342 LZTS1Q9Y250 596 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms