RNA–Protein interactions for RNA: ENST00000541169.1

VPS33A-205, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 4

Gene VPS33A, Length 594 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-205ENST00000541169 TRBC1P01850 177 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 SYPP08247 313 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 ELFN1P0C7U0 828 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 CASQ1P31415 396 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 VIPR1P32241 457 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 PAFAH1B1P43034 410 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 ARHGEF7Q14155 803 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 B4GALNT4Q76KP1 1039 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 C12orf50Q8NA57 414 aaPredicted RBP18.86■□□□□ 0.61
VPS33A-205ENST00000541169 C1orf216Q8TAB5 229 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 C1orf54Q8WWF1 131 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 ATG4AQ8WYN0 398 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 SERAC1Q96JX3 654 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 FAM118BQ9BPY3 351 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 MLPHQ9BV36 600 aaPredicted RBP18.86■□□□□ 0.61
VPS33A-205ENST00000541169 MIR1-1HGQ9H1L0 117 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 SLC6A14Q9UN76 642 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 CHKBQ9Y259 395 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 HS3ST3A1Q9Y663 406 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 NUMA1Q14980 2115 aa18.86■□□□□ 0.61
VPS33A-205ENST00000541169 LOC285095A0A1B0GVY8 99 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 CAPN8A6NHC0 703 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 PRLP01236 227 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 HLA-DPA1P20036 260 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 FDFT1P37268 417 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 PPP2CBP62714 309 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 PPP2CAP67775 309 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 STAT4Q14765 748 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 CYP1B1Q16678 543 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 IL27RAQ6UWB1 636 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 ASCL5Q7RTU5 278 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 GSTA5Q7RTV2 222 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 ZSWIM9Q86XI8 627 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 DCP2Q8IU60 420 aaKnown RBP18.85■□□□□ 0.61
VPS33A-205ENST00000541169 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP18.85■□□□□ 0.61
VPS33A-205ENST00000541169 MFSD2AQ8NA29 543 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 ATL2Q8NHH9 583 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 GRK7Q8WTQ7 553 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 COG1Q8WTW3 980 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 RMDN1Q96DB5 314 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 NSMCE3Q96MG7 304 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 TRIB3Q96RU7 358 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 PHOX2BQ99453 314 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 TRABDQ9H4I3 376 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 MAGEE1Q9HCI5 957 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 HACD3Q9P035 362 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 PAK5Q9P286 719 aa18.85■□□□□ 0.61
VPS33A-205ENST00000541169 ZFR2Q9UPR6 939 aaKnown RBP18.85■□□□□ 0.61
VPS33A-205ENST00000541169 IGLON5A6NGN9 336 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 SPINT1O43278 529 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 DFNA5O60443 496 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 PMPCBO75439 489 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 MT-CYBP00156 380 aaPredicted RBP18.84■□□□□ 0.61
VPS33A-205ENST00000541169 PDHA1P08559 390 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 LIG3P49916 1009 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 WNT3AP56704 352 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 LIPIQ6XZB0 460 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 KLHDC8BQ8IXV7 354 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 LPCAT1Q8NF37 534 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 SPATA22Q8NHS9 363 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 CCDC110Q8TBZ0 833 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 CCHCR1Q8TD31 782 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 RUNDC3BQ96NL0 473 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 CDH19Q9H159 772 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 TM9SF3Q9HD45 589 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 AASDHPPTQ9NRN7 309 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 RAD18Q9NS91 495 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 SEMA4GQ9NTN9 838 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 B4GALT6Q9UBX8 382 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 TRPM6Q9BX84 2022 aa18.84■□□□□ 0.61
VPS33A-205ENST00000541169 RALGAPA1Q6GYQ0 2036 aa18.83■□□□□ 0.61
VPS33A-205ENST00000541169 RGSL1A5PLK6 1076 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 FPGTO14772 594 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 VILLO15195 856 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 LZTS3O60299 673 aaPredicted RBP18.83■□□□□ 0.6
VPS33A-205ENST00000541169 MMP20O60882 483 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 HEXIM1O94992 359 aaKnown RBP18.83■□□□□ 0.6
VPS33A-205ENST00000541169 FGF1P05230 155 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 MAOBP27338 520 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 CD38P28907 300 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 MAT2AP31153 395 aaKnown RBP18.83■□□□□ 0.6
VPS33A-205ENST00000541169 FNTAP49354 379 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 SNX1Q13596 522 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 PCSK7Q16549 785 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 TRIM61Q5EBN2 209 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 SEL1L3Q68CR1 1132 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 KDELC1Q6UW63 502 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 NYAP1Q6ZVC0 841 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 LINC00523Q86TU6 105 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 PRELID2Q8N945 189 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 TMEM145Q8NBT3 493 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 MAGOHBQ96A72 148 aaKnown RBP18.83■□□□□ 0.6
VPS33A-205ENST00000541169 ORAI3Q9BRQ5 295 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 C10orf88Q9H8K7 445 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 LRRC40Q9H9A6 602 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 CAPN10Q9HC96 672 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 TMEM74BQ9NUR3 256 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 ITM2BQ9Y287 266 aa18.83■□□□□ 0.6
VPS33A-205ENST00000541169 AP3B1O00203 1094 aa18.82■□□□□ 0.6
VPS33A-205ENST00000541169 SLC31A1O15431 190 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms