RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 HEXDCQ8WVB3 486 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 NDRG1Q92597 394 aaKnown RBP12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 SDCCAG3Q96C92 435 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 MUS81Q96NY9 551 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 DOK1Q99704 481 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 SEZ6LQ9BYH1 1024 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 ACAD9Q9H845 621 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 SETD4Q9NVD3 440 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 DPP3Q9NY33 737 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 CAMSAP3Q9P1Y5 1249 aaPredicted RBP12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 ANAPC2Q9UJX6 822 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 PTPRFP10586 1907 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 MAGEB16A2A368 324 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 ARPC2O15144 300 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 RASAL1O95294 804 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 CHRM3P20309 590 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 PTPN9P43378 593 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 ATP6AP1Q15904 470 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 FAM45BPQ6NSW5 357 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 SPNS2Q8IVW8 549 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 DEFB106AQ8N104 65 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 CADM3Q8N126 398 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 FAM45AQ8TCE6 357 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 MRPL57Q9BQC6 102 aaKnown RBP12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 LHPPQ9H008 270 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 NOL6Q9H6R4 1146 aaKnown RBP12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 DSEQ9UL01 958 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 NDUFAF1Q9Y375 327 aa12.9□□□□□ -0.34
SFSWAP-209ENST00000540469 C16orf96A6NNT2 1141 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PTGES3LE9PB15 166 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 DLGAP1O14490 977 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 CYP2C9P11712 490 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PTPN3P26045 913 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 GLUD2P49448 558 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 IQSEC1Q6DN90 963 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 CEP97Q8IW35 865 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PELI3Q8N2H9 469 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 TRPV3Q8NET8 790 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 OR13F1Q8NGS4 319 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PNPT1Q8TCS8 783 aaKnown RBP12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 MAGED4Q96JG8 741 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 ALPK1Q96QP1 1244 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 KCTD14Q9BQ13 255 aaPredicted RBP12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 FTHL17Q9BXU8 183 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 EHD1Q9H4M9 534 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 GIMAP2Q9UG22 337 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 BAG5Q9UL15 447 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 TRAF6Q9Y4K3 522 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 A0A1W2PQ67 120 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 M0QYT0 321 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 CRCPO75575 148 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PGK1P00558 417 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 JCHAINP01591 159 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 MBL2P11226 248 aaPredicted RBP12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 GRM5P41594 1212 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PSMD8P48556 350 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 NPY2RP49146 381 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 TAS2R39P59534 338 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 BNIP2Q12982 314 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 NFYCQ13952 458 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 DEPDC1Q5TB30 811 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 ZNF470Q6ECI4 717 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 STK32CQ86UX6 486 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PARP8Q8N3A8 854 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 HMGCLL1Q8TB92 370 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 KHSRPQ92945 711 aaKnown RBP eCLIP12.89□□□□□ -0.355e-9■■□□□ 14.1
SFSWAP-209ENST00000540469 SLC45A3Q96JT2 553 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 TUBA1CQ9BQE3 449 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 MRPL45Q9BRJ2 306 aaKnown RBP12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 C1QTNF1Q9BXJ1 281 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 RHOBTB2Q9BYZ6 727 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 WDR12Q9GZL7 423 aaKnown RBP12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 NANOGQ9H9S0 305 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 POLE4Q9NR33 117 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 TRIM64CA6NLI5 447 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 MAN1A2O60476 641 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 HUS1O60921 280 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 ALOX5P09917 674 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 ALDH4A1P30038 563 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 POLR2IP36954 125 aaKnown RBP12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 CCT8P50990 548 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 TPI1P60174 286 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 CDH17Q12864 832 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 PAGE2BQ5JRK9 111 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 NAPEPLDQ6IQ20 393 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 COLGALT2Q8IYK4 626 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 IPMKQ8NFU5 416 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 GLMNQ92990 594 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 ROPN1LQ96C74 230 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 MAELQ96JY0 434 aaKnown RBP12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 SPATA17Q96L03 361 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 NSMCE3Q96MG7 304 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 VRTNQ9H8Y1 702 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 B3GNT3Q9Y2A9 372 aa12.89□□□□□ -0.35
SFSWAP-209ENST00000540469 SYCE1LA8MT33 242 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 ZNF487B1APH4 448 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 KRT75O95678 551 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 PCNAP12004 261 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 IL7RP16871 459 aa12.88□□□□□ -0.35
SFSWAP-209ENST00000540469 UBA1P22314 1058 aaKnown RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms