RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 TRPV3Q8NET8 790 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 MYRFLQ96LU7 910 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TTYH2Q9BSA4 534 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 BTBD2Q9BX70 525 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 ERVMER34-1Q9H9K5 563 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TMEM8AQ9HCN3 771 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 CACNA2D2Q9NY47 1150 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TRMT112Q9UI30 125 aaKnown RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 MKLN1Q9UL63 735 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 AURKCQ9UQB9 309 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 ATF5Q9Y2D1 282 aaPredicted RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 BOLA1Q9Y3E2 137 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 TBX22Q9Y458 520 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 PCDHA11Q9Y5I1 949 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 COPG1Q9Y678 874 aaKnown RBP12.49□□□□□ -0.41
USP3-203ENST00000538686 CSNK1G3Q9Y6M4 447 aa12.49□□□□□ -0.41
USP3-203ENST00000538686 KRT87PA6NCN2 255 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 APOC4-APOC2K7ER74 178 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 ZBTB39O15060 712 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 CST8O60676 142 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 TRIM13O60858 407 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 MED26O95402 600 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 APOC2P02655 101 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 S100A6P06703 90 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 DNAJB2P25686 324 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 AXLP30530 894 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 UQCRC1P31930 480 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 GARSP41250 739 aaKnown RBP12.48□□□□□ -0.41
USP3-203ENST00000538686 RGS7P49802 495 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 MAPK12P53778 367 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 GP2P55259 537 aaKnown RBP12.48□□□□□ -0.41
USP3-203ENST00000538686 AOC3Q16853 763 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 ZNF404Q494X3 552 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 TTC23Q5W5X9 447 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 LCN8Q6JVE9 175 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 USP37Q86T82 979 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 RAB43Q86YS6 212 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 PLPP6Q8IY26 295 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 SYNE4Q8N205 404 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 PCDH20Q8N6Y1 951 aaKnown RBP12.48□□□□□ -0.41
USP3-203ENST00000538686 CELF2-AS1Q8N7Q2 184 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 NIPA2Q8N8Q9 360 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 MCUQ8NE86 351 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 APPL2Q8NEU8 664 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 PHOX2BQ99453 314 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 APBA2Q99767 749 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 C11orf70Q9BRQ4 267 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 STRA6Q9BX79 667 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 WDR55Q9H6Y2 383 aaPredicted RBP12.48□□□□□ -0.41
USP3-203ENST00000538686 CYP26B1Q9NR63 512 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 TAS2R9Q9NYW1 312 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 TAS2R7Q9NYW3 318 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 TEKT2Q9UIF3 430 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 BTBD3Q9Y2F9 522 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 ZNF175Q9Y473 711 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 NHSL1Q5SYE7 1610 aa12.48□□□□□ -0.41
USP3-203ENST00000538686 PABPN1LA6NDY0 278 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 TMEM191CA6NGB0 347 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 SLC15A5A6NIM6 579 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 PCP4L1A6NKN8 68 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 NEMP1O14524 444 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 SULT1B1O43704 296 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 EXTL3O43909 919 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 XYLBO75191 536 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 AMHP03971 560 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ALDOAP04075 364 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 HMGN1P05114 100 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 MYL3P08590 195 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 KRT7P08729 469 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 MAPTP10636 758 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 TGM2P21980 687 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 WEE1P30291 646 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ABCG1P45844 678 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ROR1Q01973 937 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 SCRN3Q0VDG4 424 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 TAZQ16635 292 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 DDR2Q16832 855 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 GEN1Q17RS7 908 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 REP15Q6BDI9 236 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ZNF517Q6ZMY9 492 aaPredicted RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 DPY19L3Q6ZPD9 716 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 SPATC1Q76KD6 591 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 MAGEE2Q8TD90 523 aaPredicted RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 RORBQ92753 470 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 HDAC10Q969S8 669 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ROPN1LQ96C74 230 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 TMCO6Q96DC7 493 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 CCDC120Q96HB5 630 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 MUS81Q96NY9 551 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 RPRD1AQ96P16 312 aaPredicted RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 ZNF300Q96RE9 604 aaPredicted RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 NODALQ96S42 347 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 IKZF4Q9H2S9 585 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ZFP14Q9HCL3 533 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 POLMQ9NP87 494 aaPredicted RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 IGSF5Q9NSI5 407 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 MEGF6O75095 1541 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 MYH9P35579 1960 aaKnown RBP12.47□□□□□ -0.41
USP3-203ENST00000538686 LINC00862A6NCI5 91 aa12.47□□□□□ -0.41
USP3-203ENST00000538686 ZBBXA8MT70 800 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms