RNA–Protein interactions for RNA: ENST00000538120.5

CLIP1-210, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 3

Gene CLIP1, Length 2,472 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-210ENST00000538120 C2P06681 752 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 CLTBP09497 229 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 HOXD9P28356 352 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 RFC2P35250 354 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 SGSHP51688 502 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 MPP1Q00013 466 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 STX3Q13277 289 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 LRRC26Q2I0M4 334 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 SPOUT1Q5T280 376 aaKnown RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 ZNF354CQ86Y25 554 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 DENND1CQ8IV53 801 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 C10orf107Q8IVU9 208 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 LSM14AQ8ND56 463 aaKnown RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 OR6Y1Q8NGX8 325 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 AUTS2Q8WXX7 1259 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 RHOJQ9H4E5 214 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 PCDH12Q9NPG4 1184 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 LOC285095A0A1B0GVY8 99 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 C2orf78A6NCI8 922 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 TRIM43BA6NCK2 446 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 ANKRD33BA6NCL7 494 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 MAGEC1O60732 1142 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 TM7SF2O76062 418 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 ATXN1LP0C7T5 689 aaKnown RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 ARRB2P32121 409 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 RPS24P62847 133 aaKnown RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 CTBP1Q13363 440 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 PLD1Q13393 1074 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 RAB33AQ14088 237 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 LRRC36Q1X8D7 754 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 KIAA0930Q6ICG6 404 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 TMEM150AQ86TG1 271 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 OR7D4Q8NG98 312 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 TRIM43Q96BQ3 446 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 TRMT2BQ96GJ1 504 aaKnown RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 RANBP9Q96S59 729 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 CCDC106Q9BWC9 280 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 C1QTNF1Q9BXJ1 281 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 KLF16Q9BXK1 252 aaPredicted RBP10.81□□□□□ -0.68
CLIP1-210ENST00000538120 TRIM4Q9C037 500 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 NSMCE4AQ9NXX6 385 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 ETAA1Q9NY74 926 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 KCNK4Q9NYG8 393 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 TRPM5Q9NZQ8 1165 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 COPG2Q9UBF2 871 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 MYLKQ15746 1914 aa10.81□□□□□ -0.68
CLIP1-210ENST00000538120 G3V2L1 256 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 CSF2RAP15509 400 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 CORO1AP31146 461 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SLC11A2P49281 568 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 HARS2P49590 506 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SERPINH1P50454 418 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 ACTR3P61158 418 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SEPT6Q14141 434 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SIRPB2Q5JXA9 342 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 TSTD2Q5T7W7 516 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 C1orf146Q5VVC0 180 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 RAPH1Q70E73 1250 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 MYLK4Q86YV6 388 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 TMEM151AQ8N4L1 468 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 PLD4Q96BZ4 506 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 TMEM169Q96HH4 297 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 NSMCE3Q96MG7 304 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 NACA2Q9H009 215 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 THAP1Q9NVV9 213 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 CPSF2Q9P2I0 782 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 UXTQ9UBK9 157 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 AGO1Q9UL18 857 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SLC39A10Q9ULF5 831 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 F8W8V4 182 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 RNASEH1O60930 286 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 LYPLA1O75608 230 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 CD53P19397 219 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SLC1A2P43004 574 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 CDH4P55283 916 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 WDR5P61964 334 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SLC25A3Q00325 362 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 GNA12Q03113 381 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 TWF1Q12792 350 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 CDC16Q13042 620 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 FAM91A1Q658Y4 838 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 RNF111Q6ZNA4 994 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 NET1Q7Z628 596 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 DDX53Q86TM3 631 aaKnown RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 APLFQ8IW19 511 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 TNS4Q8IZW8 715 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 ARHGAP24Q8N264 748 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 POU5F2Q8N7G0 328 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 C2CD4AQ8NCU7 369 aaPredicted RBP10.8□□□□□ -0.68
CLIP1-210ENST00000538120 RILPQ96NA2 401 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 TRAPPC9Q96Q05 1148 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SEMA3CQ99985 751 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 ECSITQ9BQ95 431 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 PRKD2Q9BZL6 878 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 MAGEH1Q9H213 219 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 SPG21Q9NZD8 308 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 TAGLN3Q9UI15 199 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 LTBP2Q14767 1821 aa10.8□□□□□ -0.68
CLIP1-210ENST00000538120 HEATR9A2RTY3 570 aa10.79□□□□□ -0.68
CLIP1-210ENST00000538120 MROH6A6NGR9 719 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms