RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 TLL2Q9Y6L7 1015 aa13.22□□□□□ -0.29
LDLR-203ENST00000535915 OR51F1A6NGY5 319 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 CAPN8A6NHC0 703 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 SLC7A4O43246 635 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 TCN1P20061 433 aaPredicted RBP13.21□□□□□ -0.29
LDLR-203ENST00000535915 RANBP1P43487 201 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 FLT3LGP49771 235 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 ARSDP51689 593 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 C1QTNF8P60827 252 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 OGFRL1Q5TC84 451 aaPredicted RBP13.21□□□□□ -0.29
LDLR-203ENST00000535915 FBXL22Q6P050 247 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 FATE1Q969F0 183 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 UBXN10Q96LJ8 280 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 C8orf48Q96LL4 319 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 GCNAQ96QF7 691 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 MRPL1Q9BYD6 325 aaKnown RBP13.21□□□□□ -0.29
LDLR-203ENST00000535915 ALG9Q9H6U8 611 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 CRYL1Q9Y2S2 319 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 MROH6A6NGR9 719 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 ARSAP15289 507 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 CDKN2DP55273 166 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 RFTN1Q14699 578 aaPredicted RBP13.21□□□□□ -0.29
LDLR-203ENST00000535915 POLD3Q15054 466 aaPredicted RBP13.21□□□□□ -0.29
LDLR-203ENST00000535915 SLC14A2Q15849 920 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 GPR158Q5T848 1215 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 ZFP1Q6P2D0 407 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 CIR1Q86X95 450 aaPredicted RBP13.21□□□□□ -0.29
LDLR-203ENST00000535915 SLC22A9Q8IVM8 553 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 PGBD5Q8N414 524 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 TTC9BQ8N6N2 239 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 FBXO32Q969P5 355 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 BTN2A3PQ96KV6 586 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 TRIM4Q9C037 500 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 MFSD1Q9H3U5 465 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 ADA2Q9NZK5 511 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 KCTD3Q9Y597 815 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 PCDHB5Q9Y5E4 795 aa13.21□□□□□ -0.29
LDLR-203ENST00000535915 RAMP2O60895 175 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 SOAT2O75908 522 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 S1PR4O95977 384 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 PTK2BQ14289 1009 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 CLLU1OSQ5K130 101 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 RARS2Q5T160 578 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 RGMBQ6NW40 437 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 RTN4RL1Q86UN2 441 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 ATAD1Q8NBU5 361 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 RPRD1AQ96P16 312 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 MEAF6Q9HAF1 191 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 TRPC7Q9HCX4 862 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 MARCH4Q9P2E8 410 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 IGLV3-10A0A075B6K4 115 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 UBDO15205 165 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 INPPL1O15357 1258 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 GPC4O75487 556 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 GJB3O75712 270 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 SUPT7LO94864 414 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 SLC4A1P02730 911 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 HSPA1AP0DMV8 641 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 HSPA1BP0DMV9 641 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 CCND3P30281 292 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 FCGRTP55899 365 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 ARPP19P56211 112 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 FOLH1Q04609 750 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 DSC1Q08554 894 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 PPP1R3AQ16821 1122 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 C10orf120Q5SQS8 335 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 VARS2Q5ST30 1063 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 TMEM207Q6UWW9 146 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 PIM3Q86V86 326 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 COLGALT2Q8IYK4 626 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 ST13P4Q8IZP2 240 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 TEX26Q8N6G2 289 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 PCDH20Q8N6Y1 951 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 FAM156AQ8NDB6 213 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 ARRDC2Q8TBH0 407 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 DCUN1D1Q96GG9 259 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 FAM193BQ96PV7 902 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 BTBD9Q96Q07 612 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 FAM192AQ9GZU8 254 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 COPS7BQ9H9Q2 264 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 RGS18Q9NS28 235 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 CCDC167Q9P0B6 97 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 MARCH2Q9P0N8 246 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 LDB2O43679 373 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 EOMESO95936 686 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 TSPAN8P19075 237 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 YWHAQP27348 245 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 OR1E1P30953 314 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 NKX3-2P78367 333 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 PDAP1Q13442 181 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 FASTKQ14296 549 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 SQLEQ14534 574 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 PDK3Q15120 406 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 TRIP4Q15650 581 aaPredicted RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 TRIM71Q2Q1W2 868 aaKnown RBP13.2□□□□□ -0.3
LDLR-203ENST00000535915 CTXN3Q4LDR2 81 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 FAM26DQ5JW98 314 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 CHSY3Q70JA7 882 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 ARHGAP22Q7Z5H3 698 aa13.2□□□□□ -0.3
LDLR-203ENST00000535915 GALNT7Q86SF2 657 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms