RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	MBNL1	Q9NR56	388 aa	Known RBP	11.66	□□□□□ -0.54
CTNND1-238	ENST00000534647	ATXN7L1	Q9ULK2	861 aa	Predicted RBP	11.66	□□□□□ -0.54
CTNND1-238	ENST00000534647	CHD5	Q8TDI0	1954 aa		11.66	□□□□□ -0.54
CTNND1-238	ENST00000534647	TSPAN11	A1L157	253 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	WASH4P	A8MWX3	477 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	PLD2	O14939	933 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	BUB1	O43683	1085 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	TMCC1	O94876	653 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	IGSF6	O95976	241 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	MPST	P25325	297 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	CCKBR	P32239	447 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	HDAC4	P56524	1084 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	CDR2	Q01850	454 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	ELP6	Q0PNE2	266 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	GRM3	Q14832	879 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	LRRC14	Q15048	493 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	C15orf59	Q2T9L4	293 aa	Predicted RBP	11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	ATXN7L2	Q5T6C5	722 aa	Predicted RBP	11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	UMODL1-AS1	Q8N2C9	162 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	RTL3	Q8N8U3	475 aa	Known RBP	11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	MAGEB5	Q9BZ81	275 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	EDEM3	Q9BZQ6	932 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	ZKSCAN5	Q9Y2L8	839 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	DAAM1	Q9Y4D1	1078 aa		11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
CTNND1-238	ENST00000534647	PMS2P1	A4D2B8	440 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	CFAP69	A5D8W1	941 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	NVL	O15381	856 aa	Known RBP	11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	EFS	O43281	561 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	NOBOX	O60393	691 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	RASGRP1	O95267	797 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	CHRNB2	P17787	502 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	EEF1G	P26641	437 aa	Known RBP	11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	HTR1B	P28222	390 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	FMO1	Q01740	532 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	PTP4A2	Q12974	167 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	SERINC3	Q13530	473 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	UGP2	Q16851	508 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	ALG11	Q2TAA5	492 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	WSCD2	Q2TBF2	565 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	OGFOD3	Q6PK18	319 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	CRTC1	Q6UUV9	634 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	TRIM72	Q6ZMU5	477 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	RAB11FIP2	Q7L804	512 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	SLFN11	Q7Z7L1	901 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	GKN2	Q86XP6	184 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	TSEN2	Q8NCE0	465 aa	Known RBP	11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	ATL2	Q8NHH9	583 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	JOSD2	Q8TAC2	188 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	TMEM159	Q96B96	161 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	ZNF641	Q96N77	438 aa	Predicted RBP	11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	TMEM74	Q96NL1	305 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	NAP1L5	Q96NT1	182 aa	Predicted RBP	11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	BRINP2	Q9C0B6	783 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	LIMA1	Q9UHB6	759 aa	Known RBP	11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	APPL1	Q9UKG1	709 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	DGKB	Q9Y6T7	804 aa		11.64	□□□□□ -0.55
CTNND1-238	ENST00000534647	MYO18B	Q8IUG5	2567 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	RP1	P56715	2156 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647		A0A1B0GTH6	734 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647		A0A1W2PQM1	296 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647		D6RAR5	112 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	CASC3	O15234	703 aa	Known RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	ITGB2	P05107	769 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	HOXC4	P09017	264 aa	Predicted RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	KRT3	P12035	628 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	UNG	P13051	313 aa	Predicted RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	CTSE	P14091	401 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	PNLIP	P16233	465 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	ITIH2	P19823	946 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	SLC5A2	P31639	672 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	RFC1	P35251	1148 aa	Predicted RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	UGT1A5	P35504	534 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	CSNK1D	P48730	415 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	COPB1	P53618	953 aa	Known RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	AIF1	P55008	147 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	JAM2	P57087	298 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	SRP54	P61011	504 aa	Known RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	RHOA	P61586	193 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	ZFP36L1	Q07352	338 aa	Known RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	NFATC4	Q14934	902 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	IRF4	Q15306	451 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	CDO1	Q16878	200 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	PARP15	Q460N3	678 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	TCP11X2	Q5H9J9	407 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	BRAT1	Q6PJG6	821 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	BLOC1S3	Q6QNY0	202 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	LEKR1	Q6ZMV7	388 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	JAZF1	Q86VZ6	243 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	VSTM4	Q8IW00	320 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	FBXO39	Q8N4B4	442 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	CCDC185	Q8N715	623 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	GPR156	Q8NFN8	814 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	FAM172A	Q8WUF8	416 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	SLC20A1	Q8WUM9	679 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	GFM1	Q96RP9	751 aa	Known RBP	11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	RBM15	Q96T37	977 aa	Known RBP eCLIP	11.63	□□□□□ -0.55	3e-7	■■□□□ 13.3
CTNND1-238	ENST00000534647	ARHGAP9	Q9BRR9	750 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	APOO	Q9BUR5	198 aa		11.63	□□□□□ -0.55
CTNND1-238	ENST00000534647	B3GNT4	Q9C0J1	378 aa		11.63	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms