RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 IRAK2O43187 625 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 GLP2RO95838 553 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 ITGA2BP08514 1039 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 POLD2P49005 469 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 RIPPLY3P57055 190 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 PTGR1Q14914 329 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 FKBP1CQ5VVH2 108 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 ISM2Q6H9L7 571 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 PIK3AP1Q6ZUJ8 805 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 ARL14EPQ8N8R7 260 aaPredicted RBP4.2□□□□□ -1.74
CD44-235ENST00000532339 FAM47BQ8NA70 645 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 TEX19Q8NA77 164 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 SMRP1Q8NCR6 262 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 GPRC5AQ8NFJ5 357 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 OTUD7AQ8TE49 926 aaPredicted RBP4.2□□□□□ -1.74
CD44-235ENST00000532339 MSI2Q96DH6 328 aaKnown RBP4.2□□□□□ -1.74
CD44-235ENST00000532339 TESK2Q96S53 571 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 EIF2AK1Q9BQI3 630 aaKnown RBP4.2□□□□□ -1.74
CD44-235ENST00000532339 PDP2Q9P2J9 529 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 PHIPQ8WWQ0 1821 aa4.2□□□□□ -1.74
CD44-235ENST00000532339 FBN3Q75N90 2809 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 A0A1B0GVC2 190 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 DPPA5A6NC42 116 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 PRR23D1E9PI22 279 aaPredicted RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 EIF3FO00303 357 aaPredicted RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 SLC30A4O14863 429 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 SPTLC2O15270 562 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 DHHO43323 396 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 ATG13O75143 517 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 FAM155BO75949 473 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 HOXC6P09630 235 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 PRR23D2P0DMB1 279 aaPredicted RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 CKMT1AP12532 417 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 SMTNL2Q2TAL5 461 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 PIK3CD-AS1Q5SR53 167 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 JAKMIP3Q5VZ66 844 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 ZNF474Q6S9Z5 364 aaPredicted RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 MOGAT3Q86VF5 341 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 TTC30AQ86WT1 665 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 HERC6Q8IVU3 1022 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 CCDC105Q8IYK2 499 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 SCYL3Q8IZE3 742 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 B4GALNT2Q8NHY0 566 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 SPPL3Q8TCT6 385 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 RILPL2Q969X0 211 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 MRPL38Q96DV4 380 aaKnown RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 WDR83Q9BRX9 315 aaKnown RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 ZPBPQ9BS86 351 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 TMEM204Q9BSN7 226 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 ELOVL1Q9BW60 279 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 TP63Q9H3D4 680 aaPredicted RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 CD209Q9NNX6 404 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 PRDM8Q9NQV8 689 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 FBXO28Q9NVF7 368 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 HERC5Q9UII4 1024 aaKnown RBP4.19□□□□□ -1.74
CD44-235ENST00000532339 R4GN57 208 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 C2CD3Q4AC94 2353 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 TTC3P53804 2025 aa4.19□□□□□ -1.74
CD44-235ENST00000532339 RRN3P2A6NIE6 340 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 B9A039 149 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 EYA2O00167 538 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 ACTL6BO94805 426 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 PYGLP06737 847 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 HMOX1P09601 288 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 SRGAP2BP0DMP2 458 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 PLA2G2AP14555 144 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 CST5P28325 142 aaPredicted RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 KCNJ4P48050 445 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 CDK7P50613 346 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 ACLYP53396 1101 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 PRKAA2P54646 552 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 P2RX3P56373 397 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 PGM5Q15124 567 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 FBXO47Q5MNV8 452 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 C6orf10Q5SRN2 563 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 PDXDC1Q6P996 788 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 KLHL17Q6TDP4 642 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 LRIG3Q6UXM1 1119 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 UBALD2Q8IYN6 164 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 SUMF1Q8NBK3 374 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 SCAMP5Q8TAC9 235 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 ASB5Q8WWX0 329 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 CENPIQ92674 756 aaPredicted RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 SECISBP2LQ93073 1101 aaKnown RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 ZSCAN31Q96LW9 406 aaPredicted RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 GPR78Q96P69 363 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 TGS1Q96RS0 853 aaKnown RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 FAM167BQ9BTA0 163 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 DDX23Q9BUQ8 820 aaKnown RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 PORCNQ9H237 461 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 PABPC3Q9H361 631 aaKnown RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 TMOD2Q9NZR1 351 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 UTS2RQ9UKP6 389 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 SLC8A2Q9UPR5 921 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 B3GNT3Q9Y2A9 372 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 UBE2J1Q9Y385 318 aaPredicted RBP4.18□□□□□ -1.74
CD44-235ENST00000532339 CFAP46Q8IYW2 2715 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 ELP1O95163 1332 aa4.18□□□□□ -1.74
CD44-235ENST00000532339 UBR5O95071 2799 aaPredicted RBP4.17□□□□□ -1.74
CD44-235ENST00000532339 SLC15A5A6NIM6 579 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms