RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 KYQ8NBH2 561 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 PCDH19Q8TAB3 1148 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 ATXN7L3BQ96GX2 97 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 WDR92Q96MX6 357 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 ZNF599Q96NL3 588 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 PSKH2Q96QS6 385 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 ISCUQ9H1K1 167 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 ZWILCHQ9H900 591 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 THSD1Q9NS62 852 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 KLQ9UEF7 1012 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 SEPT3Q9UH03 358 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 BPTFQ12830 3046 aa16.92■□□□□ 0.3
CPSF1-207ENST00000531727 SHROOM3Q8TF72 1996 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 ASXL3Q9C0F0 2248 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 A0A1W2PNU3 283 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-207ENST00000531727 H3BRJ5 948 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 TRAFD1O14545 582 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-207ENST00000531727 RECQL5O94762 991 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-207ENST00000531727 ELFN1P0C7U0 828 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 SKILP12757 684 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 IL1R2P27930 398 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 SCNN1BP51168 640 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 RENBPP51606 427 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 KIAA1024LP59773 190 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 AP1S1P61966 158 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 POLR2LP62875 67 aaKnown RBP16.91■□□□□ 0.3
CPSF1-207ENST00000531727 NR1I3Q14994 352 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 IQCB1Q15051 598 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 TCEA2Q15560 299 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 DPYSL2Q16555 572 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 FIGNQ5HY92 759 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 TMCO4Q5TGY1 634 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 CAVIN1Q6NZI2 390 aaKnown RBP16.91■□□□□ 0.3
CPSF1-207ENST00000531727 LIPIQ6XZB0 460 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 NYAP1Q6ZVC0 841 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 DPPA4Q7L190 304 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 GPR155Q7Z3F1 870 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 GKN2Q86XP6 184 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 TP53INP2Q8IXH6 220 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 PLA2G15Q8NCC3 412 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 NAF1Q96HR8 494 aaKnown RBP16.91■□□□□ 0.3
CPSF1-207ENST00000531727 NSMCE3Q96MG7 304 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 SIRPGQ9P1W8 387 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 GULP1Q9UBP9 304 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 PCDHGA8Q9Y5G5 932 aa16.91■□□□□ 0.3
CPSF1-207ENST00000531727 BAHCC1Q9P281 2608 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 TEX51A0A1B0GUA7 166 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 CACNB4O00305 520 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-207ENST00000531727 NTN3O00634 580 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-207ENST00000531727 CASC3O15234 703 aaKnown RBP16.9■□□□□ 0.3
CPSF1-207ENST00000531727 ATXN7O15265 892 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-207ENST00000531727 SERPINC1P01008 464 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 TNFP01375 233 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 GM2AP17900 193 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 ARL4AP40617 200 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 SLC10A7Q0GE19 358 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 SPIDRQ14159 915 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 SMTNL2Q2TAL5 461 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 BOLA3Q53S33 107 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 POLNQ7Z5Q5 900 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 FUBP1Q96AE4 644 aaKnown RBP16.9■□□□□ 0.3
CPSF1-207ENST00000531727 PDXPQ96GD0 296 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 PRR11Q96HE9 360 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-207ENST00000531727 SLC46A1Q96NT5 459 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 RBM15Q96T37 977 aaKnown RBP eCLIP16.9■□□□□ 0.3
CPSF1-207ENST00000531727 SYNDIG1Q9H7V2 258 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 GPR34Q9UPC5 381 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 DGKBQ9Y6T7 804 aa16.9■□□□□ 0.3
CPSF1-207ENST00000531727 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-207ENST00000531727 TK2O00142 265 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 SOCS5O75159 536 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 HOXC4P09017 264 aaPredicted RBP16.89■□□□□ 0.29
CPSF1-207ENST00000531727 RBMS1P29558 406 aaKnown RBP16.89■□□□□ 0.29
CPSF1-207ENST00000531727 HSPA9P38646 679 aaKnown RBP16.89■□□□□ 0.29
CPSF1-207ENST00000531727 PDX1P52945 283 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 CXADRP78310 365 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 BROXQ5VW32 411 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 HGSNATQ68CP4 663 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 KCTD16Q68DU8 428 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 TMCO3Q6UWJ1 677 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 OR56A4Q8NGH8 313 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 KCNE4Q8WWG9 221 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 OR1E3Q8WZA6 343 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 SPOCK2Q92563 424 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 HSPH1Q92598 858 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 CCDC74AQ96AQ1 378 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 FUCA2Q9BTY2 467 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 DPH1Q9BZG8 443 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.89■□□□□ 0.29
CPSF1-207ENST00000531727 ETNK2Q9NVF9 386 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 RABGEF1Q9UJ41 708 aa16.89■□□□□ 0.29
CPSF1-207ENST00000531727 RP1P56715 2156 aa16.88■□□□□ 0.29
CPSF1-207ENST00000531727 CCDC187A0A096LP49 1063 aa16.88■□□□□ 0.29
CPSF1-207ENST00000531727 A0A1W2PQ67 120 aa16.88■□□□□ 0.29
CPSF1-207ENST00000531727 TMEM202A6NGA9 273 aa16.88■□□□□ 0.29
CPSF1-207ENST00000531727 HTRA2O43464 458 aaPredicted RBP16.88■□□□□ 0.29
CPSF1-207ENST00000531727 PEX11BO96011 259 aa16.88■□□□□ 0.29
CPSF1-207ENST00000531727 TCF4P15884 667 aa16.88■□□□□ 0.29
CPSF1-207ENST00000531727 CR2P20023 1033 aa16.88■□□□□ 0.29
CPSF1-207ENST00000531727 AMPD1P23109 780 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms