RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PLEKHA7Q6IQ23 1121 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 PPP1R2P3Q6NXS1 205 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 INO80CQ6PI98 192 aaPredicted RBP11.42□□□□□ -0.58
VPS28-214ENST00000531032 RFX8Q6ZV50 586 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 IRF2BP2Q7Z5L9 587 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 B3GNT8Q7Z7M8 397 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 SRLQ86TD4 932 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 ARHGAP12Q8IWW6 846 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 ARFGAP1Q8N6T3 406 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 NPWQ8N729 165 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 TSEN2Q8NCE0 465 aaKnown RBP11.42□□□□□ -0.58
VPS28-214ENST00000531032 OR6C4Q8NGE1 309 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 TTC9Q92623 222 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 PDXPQ96GD0 296 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 PEBP4Q96S96 227 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 RBM15Q96T37 977 aaKnown RBP eCLIP11.42□□□□□ -0.58
VPS28-214ENST00000531032 DHX35Q9H5Z1 703 aaKnown RBP11.42□□□□□ -0.58
VPS28-214ENST00000531032 SYNDIG1Q9H7V2 258 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 PARVAQ9NVD7 372 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 GULP1Q9UBP9 304 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 MYO6Q9UM54 1294 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 GPR34Q9UPC5 381 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 COL6A6A6NMZ7 2263 aa11.42□□□□□ -0.58
VPS28-214ENST00000531032 A0A1W2PQM1 296 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 TRAFD1O14545 582 aaPredicted RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 PLD2O14939 933 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 PALMO75781 387 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 RECQL5O94762 991 aaPredicted RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 TNFP01375 233 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 GM2AP17900 193 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 ERCC2P18074 760 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 CDK11BP21127 795 aaKnown RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 CCKBRP32239 447 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 KIAA1024LP59773 190 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 NSUN2Q08J23 767 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS28-214ENST00000531032 CLN3Q13286 438 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 RFTN1Q14699 578 aaPredicted RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 TCEA2Q15560 299 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 ERMARDQ5T6L9 678 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 FOXR1Q6PIV2 292 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 LIPIQ6XZB0 460 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 CYP4V2Q6ZWL3 525 aaPredicted RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 RD3Q7Z3Z2 195 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 ZNF605Q86T29 641 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 PSTKQ8IV42 348 aaKnown RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 PLA2G15Q8NCC3 412 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 GPR156Q8NFN8 814 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 OR56A4Q8NGH8 313 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 FNIP1Q8TF40 1166 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 SPOCK2Q92563 424 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 FUBP1Q96AE4 644 aaKnown RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 GFM1Q96RP9 751 aaKnown RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 KCTD15Q96SI1 283 aaPredicted RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 SNRNP25Q9BV90 132 aaKnown RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 CINPQ9BW66 212 aaPredicted RBP11.41□□□□□ -0.58
VPS28-214ENST00000531032 SP110Q9HB58 689 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 PCDHGA7Q9Y5G6 932 aa11.41□□□□□ -0.58
VPS28-214ENST00000531032 SCN8AQ9UQD0 1980 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 TMEM202A6NGA9 273 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 TMEM191CA6NGB0 347 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 TMCO5BA8MYB1 307 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 TMX2-CTNND1H3BSU7 103 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 CACNB4O00305 520 aaPredicted RBP11.4□□□□□ -0.58
VPS28-214ENST00000531032 TNFRSF10CO14798 259 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 ATMINO43313 823 aaPredicted RBP11.4□□□□□ -0.58
VPS28-214ENST00000531032 RPLP0P05388 317 aaKnown RBP11.4□□□□□ -0.58
VPS28-214ENST00000531032 HOXC4P09017 264 aaPredicted RBP11.4□□□□□ -0.58
VPS28-214ENST00000531032 ELFN1P0C7U0 828 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 ATP1A3P13637 1013 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 TNFAIP3P21580 790 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 TRIM23P36406 574 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 ZNF135P52742 658 aaPredicted RBP11.4□□□□□ -0.58
VPS28-214ENST00000531032 INHBCP55103 352 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 AP1S1P61966 158 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 POLR2LP62875 67 aaKnown RBP11.4□□□□□ -0.58
VPS28-214ENST00000531032 CCL7P80098 99 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 BCL2L1Q07817 233 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 IL10RBQ08334 325 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 CERCAMQ5T4B2 595 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 OGFOD3Q6PK18 319 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 ARHGAP36Q6ZRI8 547 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 DPPA4Q7L190 304 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 RAB11FIP2Q7L804 512 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 OR1E3Q8WZA6 343 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 TMEM74Q96NL1 305 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 PSKH2Q96QS6 385 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.4□□□□□ -0.58
VPS28-214ENST00000531032 FOXP3Q9BZS1 431 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 STRADBQ9C0K7 418 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 LRRN3Q9H3W5 708 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 FGF22Q9HCT0 170 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 ASH1LQ9NR48 2969 aaKnown RBP11.4□□□□□ -0.58
VPS28-214ENST00000531032 PCSK1NQ9UHG2 260 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 APPL1Q9UKG1 709 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 ACSL6Q9UKU0 697 aa11.4□□□□□ -0.58
VPS28-214ENST00000531032 SETXQ7Z333 2677 aaKnown RBP11.4□□□□□ -0.59
VPS28-214ENST00000531032 DFFAO00273 331 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 DAPK3O43293 454 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 PRPSAP2O60256 369 aa11.39□□□□□ -0.59
VPS28-214ENST00000531032 NOBOXO60393 691 aa11.39□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms