RNA–Protein interactions for RNA: ENST00000527020.5

USH1C-205, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,159 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-205ENST00000527020 RNF19BQ6ZMZ0 732 aa17.65■□□□□ 0.42
USH1C-205ENST00000527020 BNC2Q6ZN30 1099 aaPredicted RBP17.65■□□□□ 0.42
USH1C-205ENST00000527020 CHSY3Q70JA7 882 aa17.65■□□□□ 0.42
USH1C-205ENST00000527020 HMGCLL1Q8TB92 370 aa17.65■□□□□ 0.42
USH1C-205ENST00000527020 SPPL2BQ8TCT7 592 aa17.65■□□□□ 0.42
USH1C-205ENST00000527020 NR1H4Q96RI1 486 aaPredicted RBP17.65■□□□□ 0.42
USH1C-205ENST00000527020 EBF3Q9H4W6 596 aa17.65■□□□□ 0.42
USH1C-205ENST00000527020 PDFQ9HBH1 243 aa17.65■□□□□ 0.42
USH1C-205ENST00000527020 MAGEA13PA6NCF6 341 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 MAP3K13O43283 966 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 KIF1CO43896 1103 aaKnown RBP17.64■□□□□ 0.42
USH1C-205ENST00000527020 RBP1P09455 135 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 XRCC1P18887 633 aaPredicted RBP17.64■□□□□ 0.42
USH1C-205ENST00000527020 FGFR3P22607 806 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 OR1E1P30953 314 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 C1QTNF8P60827 252 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 CEACAM7Q14002 265 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 GPR158Q5T848 1215 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 ZNF549Q6P9A3 640 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 PGAM4Q8N0Y7 254 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 CEP70Q8NHQ1 597 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 GABPB2Q8TAK5 448 aaPredicted RBP17.64■□□□□ 0.42
USH1C-205ENST00000527020 CCDC126Q96EE4 140 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 PHF21BQ96EK2 531 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 IFT43Q96FT9 208 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 TBATAQ96M53 351 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.64■□□□□ 0.42
USH1C-205ENST00000527020 GSTO2Q9H4Y5 243 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 MEAF6Q9HAF1 191 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 TMEM161AQ9NX61 479 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 FIS1Q9Y3D6 152 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 ARL5AQ9Y689 179 aa17.64■□□□□ 0.42
USH1C-205ENST00000527020 CASQ2O14958 399 aaPredicted RBP17.64■□□□□ 0.41
USH1C-205ENST00000527020 ZDHHC11BP0C7U3 371 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 PBX3P40426 434 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 PKNOX1P55347 436 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 PRAMEP78395 509 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 RING1Q06587 406 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 SEMA3AQ14563 771 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 MGAT5BQ3V5L5 792 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 KLC3Q6P597 504 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 ISCA2Q86U28 154 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 CUZD1Q86UP6 607 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 GDPD5Q8WTR4 605 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 SEPT5Q99719 369 aaPredicted RBP17.64■□□□□ 0.41
USH1C-205ENST00000527020 SCOCQ9UIL1 159 aa17.64■□□□□ 0.41
USH1C-205ENST00000527020 STX16-NPEPL1H3BU86 382 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 UBFD1O14562 309 aaKnown RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 TBC1D4O60343 1298 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 HSPA1AP0DMV8 641 aaKnown RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 HSPA1BP0DMV9 641 aaKnown RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 ENO3P13929 434 aaPredicted RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 TACR2P21452 398 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 MAPKAPK2P49137 400 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 KCNQ1P51787 676 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 YBEYP58557 167 aaPredicted RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 GPR17Q13304 367 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 RFTN1Q14699 578 aaPredicted RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 PHC3Q8NDX5 983 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 PTERQ96BW5 349 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 FEM1CQ96JP0 617 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 DNAJC1Q96KC8 554 aaKnown RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 SPATA17Q96L03 361 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 GLT1D1Q96MS3 346 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 NPAS2Q99743 824 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 KLHL4Q9C0H6 718 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 POLR1EQ9GZS1 481 aaKnown RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 ALG9Q9H6U8 611 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 WDR41Q9HAD4 459 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 POLR3BQ9NW08 1133 aaPredicted RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 CRYL1Q9Y2S2 319 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 ACTL7AQ9Y615 435 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 TET1Q8NFU7 2136 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 UBTFL6P0CB48 400 aaPredicted RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 FDXRP22570 491 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 MSX2P35548 267 aaPredicted RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 MS4A2Q01362 244 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 GALNT3Q14435 633 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 EML3Q32P44 896 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 CYHR1Q6ZMK1 362 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 GK5Q6ZS86 529 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 USP13Q92995 863 aaPredicted RBP17.63■□□□□ 0.41
USH1C-205ENST00000527020 PPP2R3CQ969Q6 453 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 NSMCE3Q96MG7 304 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 CASD1Q96PB1 797 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 SERPINI1Q99574 410 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 VCXQ9H320 206 aa17.63■□□□□ 0.41
USH1C-205ENST00000527020 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.63■□□□□ 0.41
USH1C-205ENST00000527020 GOT2P00505 430 aaKnown RBP17.62■□□□□ 0.41
USH1C-205ENST00000527020 LYNP07948 512 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 SLC6A4P31645 630 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 SLC26A3P40879 764 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 SLC11A1P49279 550 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 AQP4P55087 323 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 GALNT1Q10472 559 aaPredicted RBP17.62■□□□□ 0.41
USH1C-205ENST00000527020 GPNMBQ14956 572 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 PPP1R3AQ16821 1122 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 RTP2Q5QGT7 225 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 SLC22A9Q8IVM8 553 aa17.62■□□□□ 0.41
USH1C-205ENST00000527020 CFAP52Q8N1V2 620 aa17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms