RNA–Protein interactions for RNA: ENST00000526669.6

CD44-224, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5 BASIC

Gene CD44, Length 870 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-224ENST00000526669 DENND2CQ68D51 928 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 DUPD1Q68J44 220 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 NAPEPLDQ6IQ20 393 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 CCDC70Q6NSX1 233 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 USP30Q70CQ3 517 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 TSPAN33Q86UF1 283 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 KBTBD6Q86V97 674 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 WDR5BQ86VZ2 330 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 PPIL6Q8IXY8 311 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 DEFB119Q8N690 84 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 BLOC1S5Q8TDH9 187 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 KLK6Q92876 244 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 TOE1Q96GM8 510 aaKnown RBP13.78□□□□□ -0.2
CD44-224ENST00000526669 WRAP53Q9BUR4 548 aaKnown RBP13.78□□□□□ -0.2
CD44-224ENST00000526669 C1QTNF1Q9BXJ1 281 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 ADGRE3Q9BY15 652 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 RAB17Q9H0T7 212 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 SHOC2Q9UQ13 582 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 COQ6Q9Y2Z9 468 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 UTP11Q9Y3A2 253 aaKnown RBP13.78□□□□□ -0.2
CD44-224ENST00000526669 ARIH1Q9Y4X5 557 aaPredicted RBP13.78□□□□□ -0.2
CD44-224ENST00000526669 SPO11Q9Y5K1 396 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 FADS3Q9Y5Q0 445 aa13.78□□□□□ -0.2
CD44-224ENST00000526669 A0A1W2PQ67 120 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 ERI2A8K979 691 aaKnown RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 PLRG1O43660 514 aaKnown RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 SUN1O94901 812 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 SEC31AO94979 1220 aaKnown RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 PCDH8O95206 1070 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 FGF1P05230 155 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 BCKDHBP21953 392 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 VIPR1P32241 457 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 HNF1BP35680 557 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 MMP12P39900 470 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 GRIA4P48058 902 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 SESN2P58004 480 aaPredicted RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 POLR2LP62875 67 aaKnown RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 SFSWAPQ12872 951 aaKnown RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 DENND5AQ6IQ26 1287 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 ERAP2Q6P179 960 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 RANBP10Q6VN20 620 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 USP45Q70EL2 814 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 ZNF534Q76KX8 674 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 NAT8LQ8N9F0 302 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 DNAAF3Q8N9W5 541 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 HCAR2Q8TDS4 363 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 PWWP2AQ96N64 755 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 GPR174Q9BXC1 333 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 BTBD1Q9H0C5 482 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 EIF2B3Q9NR50 452 aaKnown RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 WSB2Q9NYS7 404 aaPredicted RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.77□□□□□ -0.21
CD44-224ENST00000526669 MBD1Q9UIS9 605 aaPredicted RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 FBXO4Q9UKT5 387 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 FZD4Q9ULV1 537 aa13.77□□□□□ -0.21
CD44-224ENST00000526669 V9GYY5 206 aaPredicted RBP13.77□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3DA0A087WVF3 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3IA0A087WXS9 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3EA0A087X179 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3KA0A087X1G2 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CCDC78A2IDD5 438 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3FA6NER0 549 aaPredicted RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 CAPN8A6NHC0 703 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3LB9A6J9 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 AREL1O15033 823 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 GALR2O43603 387 aaPredicted RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 BUD23O43709 281 aaKnown RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 MMP20O60882 483 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 RNGTTO60942 597 aaKnown RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 ZNF217O75362 1048 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 BANF1O75531 89 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 SEMA4FO95754 770 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3HP0C7X1 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 SP9P0CG40 484 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 C7P10643 843 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CYP2A6P11509 494 aaPredicted RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 LHCGRP22888 699 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CD6P30203 668 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 MAT2AP31153 395 aaKnown RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 MAGEA6P43360 314 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 RPL26P61254 145 aaKnown RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 PPP2CBP62714 309 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 PPP2CAP67775 309 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 ELP6Q0PNE2 266 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CDH17Q12864 832 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 RALGDSQ12967 914 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 SEPT6Q14141 434 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 POU6F1Q14863 301 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CNGA3Q16281 694 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 USP39Q53GS9 565 aaKnown RBP13.76□□□□□ -0.21
CD44-224ENST00000526669 CERCAMQ5T4B2 595 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3GQ6DHY5 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3CQ6IPX1 549 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 CRTC1Q6UUV9 634 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 DPPA4Q7L190 304 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 LYSMD3Q7Z3D4 306 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 PCGF5Q86SE9 256 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 LINC00523Q86TU6 105 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 LONP2Q86WA8 852 aa13.76□□□□□ -0.21
CD44-224ENST00000526669 TBC1D3Q8IZP1 549 aaPredicted RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms