RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 CDC42BPGQ6DT37 1551 aa4.95□□□□□ -1.62
CD44-220ENST00000525688 KIAA1210Q9ULL0 1709 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 C1orf167Q5SNV9 1468 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 FNDC1Q4ZHG4 1894 aaPredicted RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 A0A1W2PQM1 296 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 TMEM232C9JQI7 657 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 AP3D1O14617 1153 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 PER2O15055 1255 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 HSPA1AP0DMV8 641 aaKnown RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 HSPA1BP0DMV9 641 aaKnown RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 ACADMP11310 421 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 COX7A2P14406 83 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 CREB5Q02930 508 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 TDGQ13569 410 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 IL13RA2Q14627 380 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 AP5B1Q2VPB7 878 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 AWAT1Q58HT5 328 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 UBAP2Q5T6F2 1119 aaKnown RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 C11orf88Q6PI97 169 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 DHRS13Q6UX07 377 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 ATF7IPQ6VMQ6 1270 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 RBM44Q6ZP01 1051 aaKnown RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 RNF144BQ7Z419 303 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 NEK8Q86SG6 692 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 CHSY1Q86X52 802 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 FAM47BQ8NA70 645 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 SPC24Q8NBT2 197 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 KCTD6Q8NC69 237 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 SETD9Q8NE22 299 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 FEM1CQ96JP0 617 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 ADAD1Q96M93 576 aaKnown RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 PRAM1Q96QH2 718 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 FNBP1Q96RU3 617 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 HGH1Q9BTY7 390 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 KLK15Q9H2R5 256 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 TTYH1Q9H313 450 aaPredicted RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 ARL15Q9NXU5 204 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 UPB1Q9UBR1 384 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 PCSK1NQ9UHG2 260 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 MOSPD1Q9UJG1 213 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 LAMP5Q9UJQ1 280 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 SARDHQ9UL12 918 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 CAMK2AQ9UQM7 478 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 TMEM5Q9Y2B1 443 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 CLDN16Q9Y5I7 305 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 WNT6Q9Y6F9 365 aa4.94□□□□□ -1.62
CD44-220ENST00000525688 AHDC1Q5TGY3 1603 aaPredicted RBP4.94□□□□□ -1.62
CD44-220ENST00000525688 C2orf81A6NN90 581 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 GTPBP1O00178 669 aaKnown RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 KIF1CO43896 1103 aaKnown RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 HBP1O60381 514 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 FMO6PO60774 539 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 FZD7O75084 574 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 SOCS5O75159 536 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 ATP5BP06576 529 aaKnown RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 CSH1P0DML2 217 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 CSH2P0DML3 217 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 PCP11498 1178 aaKnown RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 IFNAR1P17181 557 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 HLA-DPA1P20036 260 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 TACR2P21452 398 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 TACR3P29371 465 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 ACSL1P33121 698 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 NNMTP40261 264 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 UFM1P61960 85 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 ZBTB16Q05516 673 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 SHROOM1Q2M3G4 852 aaPredicted RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 PROSER3Q2NL68 480 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 PLK5Q496M5 336 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 CERKLQ49MI3 558 aaPredicted RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 AKNAD1Q5T1N1 836 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 C10orf76Q5T2E6 689 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 MEX3CQ5U5Q3 659 aaKnown RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 IYDQ6PHW0 289 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 OLFML1Q6UWY5 402 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 C17orf99Q6UX52 265 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 PPP1R42Q7Z4L9 355 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 SLFN11Q7Z7L1 901 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 ZER1Q7Z7L7 766 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 LDLRAD3Q86YD5 345 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 KLBQ86Z14 1044 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 C16orf71Q8IYS4 520 aaPredicted RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 ADSSL1Q8N142 457 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 Q8N1X5 172 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 IPMKQ8NFU5 416 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 GABPB2Q8TAK5 448 aaPredicted RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 FBXO30Q8TB52 745 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 METTL6Q8TCB7 284 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 SYAP1Q96A49 352 aaPredicted RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 BICD1Q96G01 975 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 FRG2BQ96QU4 278 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 FCRL5Q96RD9 977 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 TM2D2Q9BX73 214 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 SLC25A18Q9H1K4 315 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 SYNCQ9H7C4 482 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 MLXIPLQ9NP71 852 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 EIF2B3Q9NR50 452 aaKnown RBP4.93□□□□□ -1.62
CD44-220ENST00000525688 SEMA4GQ9NTN9 838 aa4.93□□□□□ -1.62
CD44-220ENST00000525688 MTPAPQ9NVV4 582 aaKnown RBP eCLIP4.93□□□□□ -1.62
CD44-220ENST00000525688 MPP6Q9NZW5 540 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms