RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 KRT7P08729 469 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 TPM1P09493 284 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 JUPP14923 745 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MAN1A1P33908 653 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 SERPINB6P35237 376 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 GJC1P36383 396 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 TRIM23P36406 574 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 HSPA9P38646 679 aaKnown RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MMP12P39900 470 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 GARSP41250 739 aaKnown RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 ARHGAP25P42331 645 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MMP13P45452 471 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PEX5P50542 639 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 GALNT2Q10471 571 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 ILKQ13418 452 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 C1orf61Q13536 156 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PTK2BQ14289 1009 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 IRF4Q15306 451 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 FAXCQ5TGI0 409 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 ERAP2Q6P179 960 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 ENPP7Q6UWV6 458 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PARGQ86W56 976 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 GAS2L3Q86XJ1 694 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MAP7D3Q8IWC1 876 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 CACTIN-AS1Q8N1I8 211 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PELI3Q8N2H9 469 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 FAM181AQ8N9Y4 354 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PLA2G15Q8NCC3 412 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PIH1D2Q8WWB5 315 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 MAML1Q92585 1016 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 TSACCQ96A04 125 aaPredicted RBP9.39□□□□□ -0.91
HDAC3-215ENST00000519474 APOLD1Q96LR9 279 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 ZNF670Q9BS34 389 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 C1QTNF7Q9BXJ2 289 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 TSPYL1Q9H0U9 437 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 NT5MQ9NPB1 228 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 SCUBE2Q9NQ36 999 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 NLGN3Q9NZ94 848 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 SALL4Q9UJQ4 1053 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 INTUQ9ULD6 942 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 PHTF1Q9UMS5 762 aa9.39□□□□□ -0.91
HDAC3-215ENST00000519474 A0A0U1RQS6 177 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 TPP1O14773 563 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 YY2O15391 372 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 AQP9O43315 295 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 MFSD11O43934 449 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 FZD6O60353 706 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 PRLP01236 227 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 CKMT1AP12532 417 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 MAGEA1P43355 309 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 THOP1P52888 689 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 E2F1Q01094 437 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 INSM1Q01101 510 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-215ENST00000519474 GBE1Q04446 702 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 CYP4F3Q08477 520 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 TRAF2Q12933 501 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 TARDBPQ13148 414 aaKnown RBP eCLIP9.38□□□□□ -0.91
HDAC3-215ENST00000519474 ZNF235Q14590 738 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 IFI16Q16666 785 aaKnown RBP9.38□□□□□ -0.91
HDAC3-215ENST00000519474 RALGPS1Q5JS13 557 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 FAM182AQ5T1J6 154 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 CFAP58Q5T655 872 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 KCTD16Q68DU8 428 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 PNCKQ6P2M8 343 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 DPPA4Q7L190 304 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 CNGA4Q8IV77 575 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 RHOT2Q8IXI1 618 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 RBFAQ8N0V3 343 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 BBS5Q8N3I7 341 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 ATPAF2Q8N5M1 289 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 PDCD7Q8N8D1 485 aaKnown RBP9.38□□□□□ -0.91
HDAC3-215ENST00000519474 ZNF548Q8NEK5 533 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-215ENST00000519474 ARRDC2Q8TBH0 407 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 MDM1Q8TC05 714 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 LMX1AQ8TE12 382 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 NSMCE1Q8WV22 266 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 BTN2A2Q8WVV5 523 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 RFFLQ8WZ73 363 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 FATE1Q969F0 183 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 SCRN2Q96FV2 425 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 COQ10AQ96MF6 247 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 SMIM14Q96QK8 99 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 SEMA3CQ99985 751 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 DUSP23Q9BVJ7 150 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 RBM22Q9NW64 420 aaKnown RBP eCLIP9.38□□□□□ -0.911e-6■■■□□ 15.8
HDAC3-215ENST00000519474 DTLQ9NZJ0 730 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 B4GALT6Q9UBX8 382 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 LCMT1Q9UIC8 334 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 HYOU1Q9Y4L1 999 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 OR1A2Q9Y585 309 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 LRRK1Q38SD2 2015 aa9.38□□□□□ -0.91
HDAC3-215ENST00000519474 GOLGA4Q13439 2230 aaKnown RBP9.37□□□□□ -0.91
HDAC3-215ENST00000519474 A0A1W2PQ67 120 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 H3BM21 787 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 SOCS5O75159 536 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 PGLSO95336 258 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 LCA5LO95447 670 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 MT-CO3P00414 261 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 FUCA1P04066 466 aa9.37□□□□□ -0.91
HDAC3-215ENST00000519474 HOXC4P09017 264 aaPredicted RBP9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms