RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 RAB10P61026 200 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 PRAMEF19Q5SWL8 479 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 SCUBE3Q8IX30 993 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 JOSD2Q8TAC2 188 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 ITPKCQ96DU7 683 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 YTHDF1Q9BYJ9 559 aaKnown RBP11.3□□□□□ -0.6
TCOF1-211ENST00000513346 RHOBTB2Q9BYZ6 727 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 ZNF395Q9H8N7 513 aaPredicted RBP11.3□□□□□ -0.6
TCOF1-211ENST00000513346 ADAM30Q9UKF2 790 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 MYH7BA7E2Y1 1941 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 NRCAMQ92823 1304 aa11.3□□□□□ -0.6
TCOF1-211ENST00000513346 PSMD11O00231 422 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 VPS26AO75436 327 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 EPHB3P54753 998 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 ILF2Q12905 390 aaKnown RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 SPRYD7Q5W111 196 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 ZNF605Q86T29 641 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 PACRGLQ8N7B6 248 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 NRG4Q8WWG1 115 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 VAT1Q99536 393 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 ZNF696Q9H7X3 374 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 CRLS1Q9UJA2 301 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 NFASCO94856 1347 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 A0A1W2PPW3 197 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 DENRO43583 198 aaKnown RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 RECQL4O94761 1208 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 CCNE2O96020 404 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 UNGP13051 313 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 POU1F1P28069 291 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 BTG3Q14201 252 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TLR1Q15399 786 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 PGS1Q32NB8 556 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 FAM171A1Q5VUB5 890 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 HDDC2Q7Z4H3 204 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 PARP8Q8N3A8 854 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 SLC35B2Q8TB61 432 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 EDEM1Q92611 657 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 FAM136AQ96C01 138 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 GAD1Q99259 594 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 CAB39LQ9H9S4 337 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 PCDHB5Q9Y5E4 795 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 IGKV6D-41A0A0C4DH26 115 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 CCDC85CA6NKD9 419 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 LRCH4O75427 683 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 THRBP10828 461 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 SLC2A4P14672 509 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 IST1P53990 364 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 QPRTQ15274 297 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 MZT2BQ6NZ67 158 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 ADCK2Q7Z695 626 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 ZNF420Q8TAQ5 688 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 PPP1R13LQ8WUF5 828 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 FAR1Q8WVX9 515 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 RASSF5Q8WWW0 418 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 ADAM2Q99965 735 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 MUC13Q9H3R2 512 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TMEM134Q9H6X4 195 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 PSME2Q9UL46 239 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 SPATA2Q9UM82 520 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 RIPK3Q9Y572 518 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 SNX8Q9Y5X2 465 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 FZD9O00144 591 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 GLP2RO95838 553 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TFPTP0C1Z6 253 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 HGFP14210 728 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 GDF10P55107 478 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 HTRA3P83110 453 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TCEAL1Q15170 157 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TRIP4Q15650 581 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TIGD7Q6NT04 549 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 NEPROQ6NW34 567 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 HS6ST3Q8IZP7 471 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 ASB9Q96DX5 294 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TEKT5Q96M29 485 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 NODALQ96S42 347 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 TBCDQ9BTW9 1192 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 PNMA8BQ9ULN7 279 aaPredicted RBP11.29□□□□□ -0.6
TCOF1-211ENST00000513346 SPEF2Q9C093 1822 aa11.29□□□□□ -0.6
TCOF1-211ENST00000513346 SF3B1O75533 1304 aaKnown RBP eCLIP11.28□□□□□ -0.66e-6■■■■■ 114.9
TCOF1-211ENST00000513346 A0A0J9YYE9 177 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 TRIM64CA6NLI5 447 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 G3V2T6 193 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 PGK1P00558 417 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 CSH1P0DML2 217 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 CSH2P0DML3 217 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 UMPSP11172 480 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 OXCT1P55809 520 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 HERC3Q15034 1050 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 INO80DQ53TQ3 878 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ZC3H12AQ5D1E8 599 aaKnown RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 UGT3A1Q6NUS8 523 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 GPR142Q7Z601 462 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 LRRC15Q8TF66 581 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 CD101Q93033 1021 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 MYDGFQ969H8 173 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 ISOC1Q96CN7 298 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 OTUB1Q96FW1 271 aaPredicted RBP11.28□□□□□ -0.6
TCOF1-211ENST00000513346 INVSQ9Y283 1065 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 TOPAZ1Q8N9V7 1692 aa11.28□□□□□ -0.6
TCOF1-211ENST00000513346 A0A088AWK7 358 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms