RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 HAUS8Q9BT25 410 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC25A23Q9BV35 468 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 EML4Q9HC35 981 aaKnown RBP9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 NT5MQ9NPB1 228 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 ENTPD7Q9NQZ7 604 aa9.3□□□□□ -0.92
LIMCH1-215ENST00000512632 RNF103-CHMP3A0A140T963 221 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 H3BNH8 94 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 PDHXO00330 501 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MATN3O15232 486 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 ZNF23P17027 643 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 ADARP55265 1226 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 STX1BP61266 288 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 PFKPQ01813 784 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 C6orf10Q5SRN2 563 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 HECTD2Q5U5R9 776 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 C14orf80Q86SX3 495 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 HDAC10Q969S8 669 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 PGAP3Q96FM1 320 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 IL12RB2Q99665 862 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 UPF3AQ9H1J1 476 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 ABHD16BQ9H3Z7 469 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 LMCD1Q9NZU5 365 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 IPO11Q9UI26 975 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 VWA7Q9Y334 891 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CAPNS1P04632 268 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 ALDOCP09972 364 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 BRCC3P46736 316 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 STT3AP46977 705 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 ARSDP51689 593 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TXNL4AP83876 142 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MFSD10Q14728 455 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TIGD5Q53EQ6 642 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TBCELQ5QJ74 424 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TMEM207Q6UWW9 146 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CLVS1Q8IUQ0 354 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 NPLOC4Q8TAT6 608 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 PABPC5Q96DU9 382 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 SLC10A4Q96EP9 437 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 PPP1R10Q96QC0 940 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TMEM209Q96SK2 561 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TREX1Q9NSU2 369 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TMLHEQ9NVH6 421 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 DUS2Q9NX74 493 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CD300AQ9UGN4 299 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 A0A0J9YVX5 310 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MT-ND1P03886 318 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MYL3P08590 195 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 DNAJB2P25686 324 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 AXLP30530 894 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 LHX1P48742 406 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 SCNN1GP51170 649 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 DNAJB13P59910 316 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CDC42EP1Q00587 391 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MYBPC3Q14896 1274 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 RAB41Q5JT25 222 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 KIAA0930Q6ICG6 404 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CARM1Q86X55 608 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 HSPBAP1Q96EW2 488 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 SMARCD1Q96GM5 515 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TSGA13Q96PP4 275 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 GSTO2Q9H4Y5 243 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 AKTIPQ9H8T0 292 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MEAF6Q9HAF1 191 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MRPL40Q9NQ50 206 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 MARCH4Q9P2E8 410 aaPredicted RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 TCRBV3S1A0A5B6 114 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CACNG3O60359 315 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 B3GAT3O94766 335 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CTSHP09668 335 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 HSPA8P11142 646 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CES1P23141 567 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 CDKN2DP55273 166 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 DCTN2Q13561 401 aaKnown RBP9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 ZBTB46Q86UZ6 589 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 DDIASQ8IXT1 998 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 FIBCD1Q8N539 461 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 THEGQ9P2T0 379 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 V9GYQ6 96 aa9.29□□□□□ -0.92
LIMCH1-215ENST00000512632 A0A0J9YYE9 177 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 NME4O00746 187 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 THP07101 528 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 RBP1P09455 135 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 ADRA1AP35348 466 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 CD86P42081 329 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 RPS6KA2Q15349 733 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 USP41Q3LFD5 358 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 CPNE9Q8IYJ1 553 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 RIN3Q8TB24 985 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 FAR2Q96K12 515 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 KCNA7Q96RP8 456 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 PIF1Q9H611 641 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 PNPLA3Q9NST1 481 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 TMEM181Q9P2C4 612 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 BTRCQ9Y297 605 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 TTC3P53804 2025 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 CROCCQ5TZA2 2017 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 MBLAC1A4D2B0 266 aaPredicted RBP9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 PIRTP0C851 137 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 FOXA1P55317 472 aa9.28□□□□□ -0.92
LIMCH1-215ENST00000512632 ECT2LQ008S8 904 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms