RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 FBRSQ9HAH7 460 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 CLDND1Q9NY35 253 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 PLK2Q9NYY3 685 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 MTO1Q9Y2Z2 717 aaKnown RBP8.41□□□□□ -1.06
USP54-215ENST00000497106 A0A0D9SEW6 157 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 C1orf232A0A0U1RR37 186 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 KDM1AO60341 852 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 CCDC22O60826 627 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 CPA3P15088 417 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 CHRM3P20309 590 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 CD68P34810 354 aaPredicted RBP8.41□□□□□ -1.06
USP54-215ENST00000497106 SERPINB4P48594 390 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 PLK1P53350 603 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 TNK2Q07912 1038 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 CNGA3Q16281 694 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 TTC31Q49AM3 519 aaPredicted RBP8.41□□□□□ -1.06
USP54-215ENST00000497106 GPR33Q49SQ1 333 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 EMC10Q5UCC4 262 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 Q6ZNB5 142 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 TMEM135Q86UB9 458 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 RAB42Q8N4Z0 105 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 TCP10LQ8TDR4 215 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 HDAC10Q969S8 669 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 OXNAD1Q96HP4 312 aaPredicted RBP8.41□□□□□ -1.06
USP54-215ENST00000497106 ELAC2Q9BQ52 826 aaKnown RBP8.41□□□□□ -1.06
USP54-215ENST00000497106 SUV39H2Q9H5I1 410 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 CHRAC1Q9NRG0 131 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 PIH1D1Q9NWS0 290 aaKnown RBP8.41□□□□□ -1.06
USP54-215ENST00000497106 CTNNAL1Q9UBT7 734 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 ZNF711Q9Y462 761 aa8.41□□□□□ -1.06
USP54-215ENST00000497106 USP15Q9Y4E8 981 aaPredicted RBP8.41□□□□□ -1.06
USP54-215ENST00000497106 TMEM265A0A087WTH1 108 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 LCHNA4D1U4 455 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MAGEC1O60732 1142 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 VNN2O95498 520 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 SERPINE1P05121 402 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 LTA4HP09960 611 aaKnown RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 CEBPBP17676 345 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MNAT1P51948 309 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 ARFIP2P53365 341 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 DHCR24Q15392 516 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 DLG2Q15700 870 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 ANKRD54Q6NXT1 300 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 NCEH1Q6PIU2 408 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 LINGO4Q6UY18 593 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 GPR149Q86SP6 731 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 TMC8Q8IU68 726 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 DCAKDQ8WVC6 231 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 EXOC2Q96KP1 924 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 KLF6Q99612 283 aaPredicted RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 DRC3Q9H069 523 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 NOD2Q9HC29 1040 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MKS1Q9NXB0 559 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 RUVBL2Q9Y230 463 aaKnown RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 WNT6Q9Y6F9 365 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 USH1CQ9Y6N9 552 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 KPNA3O00505 521 aaPredicted RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 SCAMP3O14828 347 aaKnown RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 SNAP91O60641 907 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 EFEMP2O95967 443 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 DLDP09622 509 aaKnown RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 HIST1H2AGP0C0S8 130 aaPredicted RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 HIST1H2ADP20671 130 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 ABL2P42684 1182 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MXRA7P84157 204 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 PFKPQ01813 784 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 CBLBQ13191 982 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 EIF4EBP2Q13542 120 aaPredicted RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 ITPRIPL2Q3MIP1 535 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MSS51Q4VC12 460 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 N4BP2L1Q5TBK1 243 aaPredicted RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 KDELC1Q6UW63 502 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 CXorf40AQ8TE69 158 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 HIST1H2AHQ96KK5 128 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 RAB3IPQ96QF0 476 aaPredicted RBP8.4□□□□□ -1.06
USP54-215ENST00000497106 HIST1H2AJQ99878 128 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 H2AFJQ9BTM1 129 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MAGEE1Q9HCI5 957 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MOCS1Q9NZB8 636 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 MARK1Q9P0L2 795 aa8.4□□□□□ -1.06
USP54-215ENST00000497106 TMEM114B3SHH9 223 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 TPBGLP0DKB5 382 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 MSH3P20585 1137 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 NMBRP28336 390 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 MC4RP32245 332 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 SERPINB5P36952 375 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 SLC26A3P40879 764 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 MAGEA3P43357 314 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 IRX4P78413 519 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 TBCCQ15814 346 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 GDPD4Q6W3E5 623 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 UBE2Q1Q7Z7E8 422 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 DCLK2Q8N568 766 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 TDRD1Q9BXT4 1180 aaKnown RBP8.4□□□□□ -1.07
USP54-215ENST00000497106 SARS2Q9NP81 518 aaKnown RBP8.4□□□□□ -1.07
USP54-215ENST00000497106 SNX15Q9NRS6 342 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 ERVW-1Q9UQF0 538 aa8.4□□□□□ -1.07
USP54-215ENST00000497106 HEPACAM2A8MVW5 462 aa8.39□□□□□ -1.07
USP54-215ENST00000497106 DNAJC6O75061 913 aa8.39□□□□□ -1.07
USP54-215ENST00000497106 PGLSO95336 258 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms