RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458	VAMP2	P63027	116 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	GAGE1	Q13065	139 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	GAGE4	Q13068	117 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	NEDD9	Q14511	834 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	PPP2R5B	Q15173	497 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	ZNF718	Q3SXZ3	478 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	PAPPA-AS1	Q5QFB9	102 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	NAA35	Q5VZE5	725 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	B3GNT6	Q6ZMB0	384 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458		Q6ZTC4	211 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	DHX40	Q8IX18	779 aa	Known RBP	5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	SCCPDH	Q8NBX0	429 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	ZCCHC10	Q8TBK6	192 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	MORC4	Q8TE76	937 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	HVCN1	Q96D96	273 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	KIF1BP	Q96EK5	621 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	APOPT1	Q96IL0	206 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	ZNF570	Q96NI8	536 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	FAM96B	Q9Y3D0	163 aa		5.74	□□□□□ -1.49
SF3B1-212	ENST00000496458	BUB3	O43684	328 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	NDUFS7	O75251	213 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	DDN	O94850	711 aa	Predicted RBP	5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	CLDN14	O95500	239 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	PMS2P2	O95744	297 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	MT-CYB	P00156	380 aa	Predicted RBP	5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	CAMK1	Q14012	370 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	HIST2H2AC	Q16777	129 aa	Predicted RBP	5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	TCTN1	Q2MV58	587 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	AMZ1	Q400G9	498 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	ZNF672	Q499Z4	452 aa	Predicted RBP	5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	WBP2NL	Q6ICG8	309 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	CPLX2	Q6PUV4	134 aa	Known RBP	5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	CUZD1	Q86UP6	607 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	ZCCHC9	Q8N567	271 aa	Known RBP	5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	SPATA20	Q8TB22	786 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	C3orf30	Q96M34	536 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	IL17F	Q96PD4	163 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	MAGEE1	Q9HCI5	957 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	BPIFA1	Q9NP55	256 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	KCNG2	Q9UJ96	466 aa		5.73	□□□□□ -1.49
SF3B1-212	ENST00000496458	MAGEA13P	A6NCF6	341 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	IFNL4	K9M1U5	179 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	HOXC11	O43248	304 aa	Predicted RBP	5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	MMP2	P08253	660 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	COX7A2	P14406	83 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	AGA	P20933	346 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	STX2	P32856	288 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	POU5F1B	Q06416	359 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	RNPS1	Q15287	305 aa	Known RBP	5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	ATP13A5	Q4VNC0	1218 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	PPP6R3	Q5H9R7	873 aa	Predicted RBP	5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	TXNDC8	Q6A555	127 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	FBXO46	Q6PJ61	603 aa	Predicted RBP	5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	LCTL	Q6UWM7	567 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	SMC5	Q8IY18	1101 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	SLC35F3	Q8IY50	421 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	AGBL3	Q8NEM8	1001 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	HTRA1	Q92743	480 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	KLHL15	Q96M94	604 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	ZNF385A	Q96PM9	386 aa	Known RBP	5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	PKP4	Q99569	1192 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	SMARCAL1	Q9NZC9	954 aa		5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	LSM4	Q9Y4Z0	139 aa	Known RBP	5.72	□□□□□ -1.49
SF3B1-212	ENST00000496458	SOCS6	O14544	535 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	TSPAN4	O14817	238 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	CAMTA2	O94983	1202 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	TF	P02787	698 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	PYGL	P06737	847 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	EIF2S3	P41091	472 aa	Known RBP	5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	ECT2L	Q008S8	904 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	POU3F1	Q03052	451 aa	Predicted RBP	5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	TNFAIP1	Q13829	316 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	OASL	Q15646	514 aa	Known RBP	5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	SLC9B1	Q4ZJI4	515 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	SGO1	Q5FBB7	561 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	ANKRD54	Q6NXT1	300 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	BEST2	Q8NFU1	509 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	NEK9	Q8TD19	979 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	DNASE2B	Q8WZ79	361 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	CNGB3	Q9NQW8	809 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	PPP1R14D	Q9NXH3	145 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	ZNF224	Q9NZL3	707 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	RCOR1	Q9UKL0	485 aa		5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	LRRFIP2	Q9Y608	721 aa	Known RBP	5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	ATXN2	Q99700	1313 aa	Known RBP	5.71	□□□□□ -1.5
SF3B1-212	ENST00000496458	LDLRAD4	O15165	306 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	PLRG1	O43660	514 aa	Known RBP	5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	EIF3J	O75822	258 aa	Known RBP	5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	CYC1	P08574	325 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	LINC00271	P0C7V0	271 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	IRF1	P10914	325 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	G6PD	P11413	515 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	DLX5	P56178	289 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	WDR73	Q6P4I2	378 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	MTSS1L	Q765P7	747 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	SMAP1	Q8IYB5	467 aa	Predicted RBP	5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	DSEL	Q8IZU8	1212 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	RFLNB	Q8N5W9	214 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	ZBTB2	Q8N680	514 aa		5.7	□□□□□ -1.5
SF3B1-212	ENST00000496458	SECTM1	Q8WVN6	248 aa		5.7	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms