RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MAP3K10Q02779 954 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 MRPL28Q13084 256 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 FAM98BQ52LJ0 330 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 ZDHHC13Q8IUH4 622 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 RBM12BQ8IXT5 1001 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 SYTL1Q8IYJ3 562 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 SLC35B2Q8TB61 432 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 C17orf50Q8WW18 174 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 ACOX2Q99424 681 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 EPS8L2Q9H6S3 715 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 VPS45Q9NRW7 570 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 TRMT13Q9NUP7 481 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 ANAPC2Q9UJX6 822 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 FADS3Q9Y5Q0 445 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 STYXL1Q9Y6J8 313 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 CLUHO75153 1309 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 H6PDO95479 791 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 TRMT10BQ6PF06 316 aaKnown RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 GK5Q6ZS86 529 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 AHI1Q8N157 1196 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 ZBTB8BQ8NAP8 495 aaPredicted RBP16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 LPGAT1Q92604 370 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 ROGDIQ9GZN7 287 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 DTLQ9NZJ0 730 aa16.37■□□□□ 0.21
CCDC88B-209ENST00000494080 UGT1A9O60656 530 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 HNRNPLP14866 589 aaKnown RBP eCLIP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 DPYSQ14117 519 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 IKBKEQ14164 716 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 NR6A1Q15406 480 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 CARTPTQ16568 116 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 SYPL2Q5VXT5 272 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 DRICH1Q6PGQ1 229 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 SLC24A5Q71RS6 500 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 SPATA22Q8NHS9 363 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 LRTOMTQ8WZ04 291 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 COQ10BQ9H8M1 238 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 UGT1A7Q9HAW7 530 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 UGT1A10Q9HAW8 530 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 UGT1A8Q9HAW9 530 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 FETUBQ9UGM5 382 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 SAPCD2Q86UD0 394 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 ITIH5Q86UX2 942 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 CMASQ8NFW8 434 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 PSMA8Q8TAA3 256 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 SKA1Q96BD8 255 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 TCRBV7S3A2A0A539 114 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 TMEM114B3SHH9 223 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 HS6ST1O60243 411 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 ALOX15P16050 662 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 HDCP19113 662 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 CDH15P55291 814 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 WNT7BP56706 349 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 PFKFB4Q16877 469 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 INTS6LQ5JSJ4 861 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 DEPDC1Q5TB30 811 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 METTL21CQ5VZV1 264 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 PRMT9Q6P2P2 845 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 RHBDF2Q6PJF5 856 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 ERI1Q8IV48 349 aaKnown RBP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 C8orf59Q8N0T1 100 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 ZNF567Q8N184 647 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 ACTRT2Q8TDY3 377 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 HDAC10Q969S8 669 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 XPR1Q9UBH6 696 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 DNMT3LQ9UJW3 386 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 FAM149AA5PLN7 773 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 C2P06681 752 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 NR4A1P22736 598 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 PBLDP30039 288 aaPredicted RBP16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 DAOAP59103 153 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 ANKS6Q68DC2 871 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 NUDT18Q6ZVK8 323 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 TAC4Q86UU9 113 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 PGAM4Q8N0Y7 254 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 ZNF781Q8N8C0 355 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 POC5Q8NA72 575 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 FIG4Q92562 907 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 DNAJC28Q9NX36 388 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 GMIPQ9P107 970 aa16.36■□□□□ 0.21
CCDC88B-209ENST00000494080 SNAP91O60641 907 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 METTL18O95568 372 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 S100A1P23297 94 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 TIGD5Q53EQ6 642 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 OR52E8Q6IFG1 317 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 PARP8Q8N3A8 854 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 SCAMP5Q8TAC9 235 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 DNAJB14Q8TBM8 379 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 PTCD3Q96EY7 689 aaKnown RBP16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 FTHL17Q9BXU8 183 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 RHOBTB2Q9BYZ6 727 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 ACTR8Q9H981 624 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 BPIFA1Q9NP55 256 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 FGFR1P11362 822 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 HLA-DPA1P20036 260 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 PRKCZQ05513 592 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 MSS51Q4VC12 460 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 ARHGAP17Q68EM7 881 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 RNF19BQ6ZMZ0 732 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 OR52K2Q8NGK3 314 aa16.35■□□□□ 0.21
CCDC88B-209ENST00000494080 DEFB118Q96PH6 123 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms