RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	DENND4A	Q7Z401	1863 aa		11.69	□□□□□ -0.54
BRCA1-222	ENST00000493919	TRPC5OS	A6NMA1	111 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	LGALS16	A8MUM7	142 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	PRSS44	E7EML9	344 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	TSPAN6	O43657	245 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SPOP	O43791	374 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	USP1	O94782	785 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ALDH1A2	O94788	518 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ATP6V1B1	P15313	513 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	CD19	P15391	556 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	HADHA	P40939	763 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SEC24C	P53992	1094 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	GUCY1A3	Q02108	690 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	RAD51	Q06609	339 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	COTL1	Q14019	142 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ERV3-1	Q14264	604 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	RGS21	Q2M5E4	152 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	PARP6	Q2NL67	630 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	FBXO48	Q5FWF7	155 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ADAMTS16	Q8TE57	1224 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SHC3	Q92529	594 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ZNF512	Q96ME7	567 aa	Predicted RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	HEXIM2	Q96MH2	286 aa	Known RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	KREMEN1	Q96MU8	473 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ACAT2	Q9BWD1	397 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	B3GNT5	Q9BYG0	378 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	DNMT3B	Q9UBC3	853 aa	Known RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	VPS4A	Q9UN37	437 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	MAGED2	Q9UNF1	606 aa	Predicted RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ZNF175	Q9Y473	711 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	PCDHGA2	Q9Y5H1	932 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	MYH10	P35580	1976 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	C15orf38-AP3S2	A0A0A6YYH1	394 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	CAPN8	A6NHC0	703 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919		F8VP50	259 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	RHO	P08100	348 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	FAM228B	P0C875	321 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	C7	P10643	843 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	MYL4	P12829	197 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	PCSK2	P16519	638 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	PRKCA	P17252	672 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ALOX12	P18054	663 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	MAN2A2	P49641	1150 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	NCALD	P61601	193 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	RPL10A	P62906	217 aa	Known RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	IFRD2	Q12894	506 aa	Predicted RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	DMC1	Q14565	340 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	MAPKAPK3	Q16644	382 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	MAJIN	Q3KP22	176 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	KANK2	Q63ZY3	851 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	EMB	Q6PCB8	327 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	PDZD4	Q76G19	769 aa	Predicted RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SLFN11	Q7Z7L1	901 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SMARCD1	Q96GM5	515 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	TMEM176A	Q96HP8	235 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	RANBP9	Q96S59	729 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	TRIM55	Q9BYV6	548 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	OSBPL6	Q9BZF3	934 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SP110	Q9HB58	689 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	ASAH2	Q9NR71	780 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	FAM207A	Q9NSI2	230 aa	Predicted RBP	11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SNX7	Q9UNH6	387 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	HCN4	Q9Y3Q4	1203 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	DOCK6	Q96HP0	2047 aa		11.68	□□□□□ -0.54
BRCA1-222	ENST00000493919	SLC12A8	A0AV02	714 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	HEATR9	A2RTY3	570 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	CTAGE9	A4FU28	777 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	FAM172BP	A6NC97	362 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	ATP5H	O75947	161 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	CCNDBP1	O95273	360 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	PIGN	O95427	931 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	ESRRA	P11474	423 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	GFAP	P14136	432 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	ETS2	P15036	469 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	L1CAM	P32004	1257 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	POU3F4	P49335	361 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	KLK7	P49862	253 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	MFAP3	P55082	362 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	C2orf54	Q08AI8	447 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	KCNMA1	Q12791	1236 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	PTPN21	Q16825	1174 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	SLX4IP	Q5VYV7	408 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	MZT2A	Q6P582	158 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	VSTM1	Q6UX27	236 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	APTX	Q7Z2E3	356 aa	Known RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	PRUNE1	Q86TP1	453 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	CCDC36	Q8IYA8	594 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	CRYBG2	Q8N1P7	616 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	TAB3	Q8N5C8	712 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	UBR7	Q8N806	425 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	ING5	Q8WYH8	240 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	MARVELD3	Q96A59	401 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	BIRC8	Q96P09	236 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	NECAB3	Q96P71	396 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	DDX50	Q9BQ39	737 aa	Known RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	PHF7	Q9BWX1	381 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	C6orf62	Q9GZU0	229 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	FAM124B	Q9H5Z6	455 aa	Predicted RBP	11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	SIX2	Q9NPC8	291 aa		11.67	□□□□□ -0.54
BRCA1-222	ENST00000493919	TBC1D14	Q9P2M4	693 aa		11.67	□□□□□ -0.54

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