RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 BECN2A8MW95 431 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 INAFM1C9JVW0 142 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 RGS14O43566 566 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TFPIP10646 304 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 CKMT1AP12532 417 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 NAGAP17050 411 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 HMGB2P26583 209 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 HOXA11P31270 313 aaPredicted RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 CCKBRP32239 447 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 HALP42357 657 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 PPM1FP49593 454 aaPredicted RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 NUDT6P53370 316 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 HDAC4P56524 1084 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 NANOS2P60321 138 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 CRYZQ08257 329 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TBL3Q12788 808 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 GPS2Q13227 327 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 RUNX2Q13950 521 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 PLCB4Q15147 1175 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ZRSR2Q15696 482 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ASIC2Q16515 512 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 DUSP6Q16828 381 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 EDRF1Q3B7T1 1238 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ZNF585BQ52M93 769 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 DCAF6Q58WW2 860 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 PRAMEF19Q5SWL8 479 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 CST9Q5W186 159 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ATG9BQ674R7 924 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TMEM71Q6P5X7 295 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 GJB7Q6PEY0 223 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 IL20RBQ6UXL0 311 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TRILQ7L0X0 811 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ZNF367Q7RTV3 350 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 FJX1Q86VR8 437 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 CHD1LQ86WJ1 897 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 SPATA2LQ8IUW3 424 aaPredicted RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 EGFL6Q8IUX8 553 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ANKRD18AQ8IVF6 992 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ADHFE1Q8IWW8 467 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 PRR26Q8N8Z3 221 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 USP38Q8NB14 1042 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 KDM1BQ8NB78 822 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 RASSF8Q8NHQ8 419 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 B4GALNT2Q8NHY0 566 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ELP5Q8TE02 316 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 FRAT1Q92837 279 aaPredicted RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TMEM18Q96B42 140 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 MASTLQ96GX5 879 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ZNF479Q96JC4 524 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 APOLD1Q96LR9 279 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ISCA1Q9BUE6 129 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TWSG1Q9GZX9 223 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 RASSF1Q9NS23 344 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 ZNF580Q9UK33 172 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 DNAJC16Q9Y2G8 782 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 LAS1LQ9Y4W2 734 aaKnown RBP2.29□□□□□ -2.04
HMGB1-208ENST00000490788 TRIM17Q9Y577 477 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 PIEZO1Q92508 2521 aa2.29□□□□□ -2.04
HMGB1-208ENST00000490788 BTAF1O14981 1849 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 A0A0A0MQY5 61 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 FAM157AC9JC47 383 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 IFRD1O00458 451 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 ACOT8O14734 319 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 KLK10O43240 276 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 SLC25A17O43808 307 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 SERPINI2O75830 405 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 MTA2O94776 668 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 PAPSS2O95340 614 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 GLUD1P00367 558 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 SERPINC1P01008 464 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 LCATP04180 440 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 TPM2P07951 284 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 FOSL2P15408 326 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 C21orf33P30042 268 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 HNF1BP35680 557 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 TNNT2P45379 298 aaPredicted RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 MTNR1AP48039 350 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 GLUD2P49448 558 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 PMS2P54278 862 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 ARSFP54793 590 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 HUNKP57058 714 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 YWHAZP63104 245 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 LTBQ06643 244 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 DMTNQ08495 405 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 PPFIA1Q13136 1202 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 BIRC3Q13489 604 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 NFATC4Q14934 902 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 NAA25Q14CX7 972 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 TDRD12Q587J7 1177 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 FBXO47Q5MNV8 452 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 SH2D4BQ5SQS7 431 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 UBAP2Q5T6F2 1119 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 ASPHD1Q5U4P2 390 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 CAPRIN2Q6IMN6 1127 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 TYW3Q6IPR3 259 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 Q6ZSV7 163 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 NEK10Q6ZWH5 1172 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 CREB3L2Q70SY1 520 aa2.28□□□□□ -2.04
HMGB1-208ENST00000490788 MEPCEQ7L2J0 689 aaKnown RBP2.28□□□□□ -2.04
HMGB1-208ENST00000490788 PATL1Q86TB9 770 aaKnown RBP2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms