RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	CAND1	Q86VP6	1230 aa	Known RBP	18.32	■□□□□ 0.52
SRM-206	ENST00000490101	RELL1	Q8IUW5	271 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	PDIK1L	Q8N165	341 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	MREG	Q8N565	214 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	SH2D3C	Q8N5H7	860 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	ATP11C	Q8NB49	1132 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	PWWP2A	Q96N64	755 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	NUDCD1	Q96RS6	583 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	RBM15	Q96T37	977 aa	Known RBP eCLIP	18.32	■□□□□ 0.52
SRM-206	ENST00000490101	GABRG3	Q99928	467 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	GTPBP2	Q9BX10	602 aa	Known RBP	18.32	■□□□□ 0.52
SRM-206	ENST00000490101	CEP44	Q9C0F1	390 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	CD93	Q9NPY3	652 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	ELOVL2	Q9NXB9	296 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	ERVW-1	Q9UQF0	538 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	CFAP47	Q6ZTR5	3102 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	PI4KA	P42356	2102 aa		18.32	■□□□□ 0.52
SRM-206	ENST00000490101	ASCC3	Q8N3C0	2202 aa	Known RBP	18.31	■□□□□ 0.52
SRM-206	ENST00000490101	CEP192	Q8TEP8	1941 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	ZNF217	O75362	1048 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	MT-CYB	P00156	380 aa	Predicted RBP	18.31	■□□□□ 0.52
SRM-206	ENST00000490101	ATP5B	P06576	529 aa	Known RBP	18.31	■□□□□ 0.52
SRM-206	ENST00000490101	SRPRA	P08240	638 aa	Known RBP	18.31	■□□□□ 0.52
SRM-206	ENST00000490101	ADRA1A	P35348	466 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	CD86	P42081	329 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	DPP6	P42658	865 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	RGR	P47804	291 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	ATXN3	P54252	364 aa	Predicted RBP	18.31	■□□□□ 0.52
SRM-206	ENST00000490101	DHX9	Q08211	1270 aa	Known RBP	18.31	■□□□□ 0.52
SRM-206	ENST00000490101	IHH	Q14623	411 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	FNBP1L	Q5T0N5	605 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	SYCP2L	Q5T4T6	812 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	NAPEPLD	Q6IQ20	393 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	LRRC8B	Q6P9F7	803 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	SLC23A3	Q6PIS1	610 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	CENPU	Q71F23	418 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	ZNF534	Q76KX8	674 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	LINC00523	Q86TU6	105 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	CCDC25	Q86WR0	208 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	MRGPRX3	Q96LB0	322 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	SERPINB12	Q96P63	405 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	CD248	Q9HCU0	757 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	UBP1	Q9NZI7	540 aa		18.31	■□□□□ 0.52
SRM-206	ENST00000490101	FCF1	Q9Y324	198 aa	Known RBP	18.31	■□□□□ 0.52
SRM-206	ENST00000490101	ADAMTS9	Q9P2N4	1935 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	AP3B1	O00203	1094 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	ALOX15B	O15296	676 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	INSIG1	O15503	277 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	ATP9B	O43861	1147 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	ZNF821	O75541	412 aa	Predicted RBP	18.3	■□□□□ 0.52
SRM-206	ENST00000490101	SERPINF2	P08697	491 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	DLD	P09622	509 aa	Known RBP	18.3	■□□□□ 0.52
SRM-206	ENST00000490101	CEACAM1	P13688	526 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	SPINK2	P20155	84 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	CSRP1	P21291	193 aa	Known RBP	18.3	■□□□□ 0.52
SRM-206	ENST00000490101	GRIA1	P42261	906 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	STK19	P49842	368 aa	Predicted RBP	18.3	■□□□□ 0.52
SRM-206	ENST00000490101	WNT3A	P56704	352 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	SPARCL1	Q14515	664 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	DUOXA1	Q1HG43	343 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	SLC41A1	Q8IVJ1	513 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	PLPP6	Q8IY26	295 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	ZC3H8	Q8N5P1	291 aa	Known RBP eCLIP	18.3	■□□□□ 0.52
SRM-206	ENST00000490101	PCDH20	Q8N6Y1	951 aa	Known RBP	18.3	■□□□□ 0.52
SRM-206	ENST00000490101	KDM1B	Q8NB78	822 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	RPL10L	Q96L21	214 aa	Known RBP	18.3	■□□□□ 0.52
SRM-206	ENST00000490101	MRGPRX2	Q96LB1	330 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	HSPA12B	Q96MM6	686 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	NOD2	Q9HC29	1040 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	CASS4	Q9NQ75	786 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	STON1	Q9Y6Q2	735 aa		18.3	■□□□□ 0.52
SRM-206	ENST00000490101	ASPM	Q8IZT6	3477 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	NDUFS2	O75306	463 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	PMPCB	O75439	489 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	GSR	P00390	522 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	EPO	P01588	193 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	HOXD12	P35452	270 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	SCNN1B	P51168	640 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	AP1S1	P61966	158 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	STARD3	Q14849	445 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	DLG2	Q15700	870 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	MSS51	Q4VC12	460 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	DNAJC21	Q5F1R6	531 aa	Known RBP	18.29	■□□□□ 0.52
SRM-206	ENST00000490101	PEAR1	Q5VY43	1037 aa	Predicted RBP	18.29	■□□□□ 0.52
SRM-206	ENST00000490101	C22orf39	Q6P5X5	142 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	NCEH1	Q6PIU2	408 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	RANBP10	Q6VN20	620 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	TRMT10C	Q7L0Y3	403 aa	Known RBP	18.29	■□□□□ 0.52
SRM-206	ENST00000490101	SRL	Q86TD4	932 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	IPMK	Q8NFU5	416 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	CEP76	Q8TAP6	659 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	LRRC39	Q96DD0	335 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	MRGPRX1	Q96LB2	322 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	GDAP1L1	Q96MZ0	367 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	TBL1Y	Q9BQ87	522 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	CIPC	Q9C0C6	399 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	ARNT2	Q9HBZ2	717 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	SAYSD1	Q9NPB0	183 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	SCUBE2	Q9NQ36	999 aa		18.29	■□□□□ 0.52
SRM-206	ENST00000490101	SLCO3A1	Q9UIG8	710 aa		18.29	■□□□□ 0.52

Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms