RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 SMIM29Q86T20 159 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 TADA2BQ86TJ2 420 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 FOXRED2Q8IWF2 684 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 NAGSQ8N159 534 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 TNIP2Q8NFZ5 429 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 TANKQ92844 425 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 OTULINQ96BN8 352 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 KCNN2Q9H2S1 579 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 LRRC4Q9HBW1 653 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 TCF7L2Q9NQB0 619 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 HSPB7Q9UBY9 170 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 CARD8Q9Y2G2 431 aa3.94□□□□□ -1.78
VPS41-213ENST00000485955 DDX52Q9Y2R4 599 aaKnown RBP eCLIP3.94□□□□□ -1.78
VPS41-213ENST00000485955 CECR2Q9BXF3 1484 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 IGHV4OR15-8A0A075B7B6 117 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 A0A0B4J293 547 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 GOLGA6L10A0A0M3HER8 536 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 LINC01565O15544 149 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 XPNPEP2O43895 674 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 TACC1O75410 805 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 GAS8-AS1O95177 125 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 HEXAP06865 529 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 GALTP07902 379 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 AGAP20933 346 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 STX2P32856 288 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 EIF2S3P41091 472 aaKnown RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 GPD2P43304 727 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 ZNF132P52740 706 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 CDH15P55291 814 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 NLRP5P59047 1200 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 ZBTB17Q13105 803 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 VEPH1Q14D04 833 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 TAF11Q15544 211 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 FBXO46Q6PJ61 603 aaPredicted RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 SLC22A25Q6T423 547 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 UNQ6126/PRO20091Q6UXV3 157 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 TUBA1AQ71U36 451 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 MTSS1LQ765P7 747 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 LRRTM4Q86VH4 590 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 EXOC3L1Q86VI1 746 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 TMPRSS12Q86WS5 348 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 TMTC1Q8IUR5 882 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 DHX40Q8IX18 779 aaKnown RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 ZBTB8BQ8NAP8 495 aaPredicted RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 TRIM63Q969Q1 353 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 ZBTB10Q96DT7 871 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 MAELQ96JY0 434 aaKnown RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 TUBA1CQ9BQE3 449 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 HAUS8Q9BT25 410 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 ESRP2Q9H6T0 727 aaKnown RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 EVA1AQ9H8M9 152 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 UBTD1Q9HAC8 227 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 CNOT7Q9UIV1 285 aaKnown RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 TINAGQ9UJW2 476 aa3.93□□□□□ -1.78
VPS41-213ENST00000485955 LSM4Q9Y4Z0 139 aaKnown RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 ATXN2Q99700 1313 aaKnown RBP3.93□□□□□ -1.78
VPS41-213ENST00000485955 BCAT2O15382 392 aaPredicted RBP3.92□□□□□ -1.78
VPS41-213ENST00000485955 PLRG1O43660 514 aaKnown RBP3.92□□□□□ -1.78
VPS41-213ENST00000485955 MTA2O94776 668 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 G6PDP11413 515 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 SRCP12931 536 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 GPTP24298 496 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 CNTFP26441 200 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 CHATP28329 748 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 SHMT1P34896 483 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 NEDD9Q14511 834 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 C2orf68Q2NKX9 166 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 HIST2H2BCQ6DN03 193 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 HIST2H2BDQ6DRA6 164 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 WDR73Q6P4I2 378 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 TMEM81Q6P7N7 255 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 LRRC8DQ7L1W4 858 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 ANKRD18AQ8IVF6 992 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 SLC35F3Q8IY50 421 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 AGBL3Q8NEM8 1001 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 CD101Q93033 1021 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 UBXN10Q96LJ8 280 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 SIN3AQ96ST3 1273 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 GLIS2Q9BZE0 524 aaPredicted RBP3.92□□□□□ -1.78
VPS41-213ENST00000485955 GPR63Q9BZJ6 419 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 SPRY4Q9C004 299 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 INTS2Q9H0H0 1204 aaKnown RBP3.92□□□□□ -1.78
VPS41-213ENST00000485955 EBF2Q9HAK2 575 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 MAGEE1Q9HCI5 957 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 MKKSQ9NPJ1 570 aaPredicted RBP3.92□□□□□ -1.78
VPS41-213ENST00000485955 C20orf141Q9NUB4 165 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 BEX4Q9NWD9 120 aaPredicted RBP3.92□□□□□ -1.78
VPS41-213ENST00000485955 GGA3Q9NZ52 723 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 ZNF224Q9NZL3 707 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 C1RLQ9NZP8 487 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 SLC25A10Q9UBX3 287 aaPredicted RBP3.92□□□□□ -1.78
VPS41-213ENST00000485955 NOL12Q9UGY1 213 aaKnown RBP eCLIP3.92□□□□□ -1.78
VPS41-213ENST00000485955 SIX4Q9UIU6 781 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 RCOR1Q9UKL0 485 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 ZNF711Q9Y462 761 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 PCDHAC2Q9Y5I4 1007 aa3.92□□□□□ -1.78
VPS41-213ENST00000485955 A0A0G2JPF8 293 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 HNRNPCL3B7ZW38 293 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 LMX1BO60663 402 aa3.91□□□□□ -1.78
VPS41-213ENST00000485955 HNRNPCL1O60812 293 aaKnown RBP3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms