RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 PRORYQ9H606 182 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 MRPL47Q9HD33 250 aaKnown RBP21.68■■□□□ 1.06
USP40-215ENST00000484528 STAU2Q9NUL3 570 aaKnown RBP eCLIP21.68■■□□□ 1.06
USP40-215ENST00000484528 PADI4Q9UM07 663 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 SATB2Q9UPW6 733 aa21.68■■□□□ 1.06
USP40-215ENST00000484528 PMS2P1A4D2B8 440 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 TMEM110-MUSTN1A8MSY1 372 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 RECQL5O94762 991 aaPredicted RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 ELFN1P0C7U0 828 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 MYBL1P10243 752 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 LSSP48449 732 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 HCAR3P49019 387 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 PCBP4P57723 403 aaKnown RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 SRP54P61011 504 aaKnown RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 TLE3Q04726 772 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 MTM1Q13496 603 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 ZNF235Q14590 738 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 RFTN1Q14699 578 aaPredicted RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 LBRQ14739 615 aaKnown RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 ACAP1Q15027 740 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 ELOCQ15369 112 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 TMCO4Q5TGY1 634 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 TXNRD3NBQ6F5E7 133 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 ESRP1Q6NXG1 681 aaKnown RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 FOXR1Q6PIV2 292 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 LIPIQ6XZB0 460 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 FSTL5Q8N475 847 aaPredicted RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 NAT6Q93015 286 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 BTBD6Q96KE9 485 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 ZNF578Q96N58 590 aaPredicted RBP21.67■■□□□ 1.06
USP40-215ENST00000484528 CCDC3Q9BQI4 270 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.67■■□□□ 1.06
USP40-215ENST00000484528 EDEM3Q9BZQ6 932 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 ISCUQ9H1K1 167 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 SEPT3Q9UH03 358 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 ENTPD2Q9Y5L3 495 aa21.67■■□□□ 1.06
USP40-215ENST00000484528 MGAQ8IWI9 3026 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 PCK1P35558 622 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 ARL4AP40617 200 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 AGERQ15109 404 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 DPYSL2Q16555 572 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 HGSNATQ68CP4 663 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 DPPA4Q7L190 304 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 ZNF248Q8NDW4 579 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 PSKH2Q96QS6 385 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 ASCL3Q9NQ33 180 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 GPR34Q9UPC5 381 aa21.66■■□□□ 1.06
USP40-215ENST00000484528 GCN1Q92616 2671 aaKnown RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 TMEM202A6NGA9 273 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 EIF4E1BA6NMX2 242 aaKnown RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 TRAFD1O14545 582 aaPredicted RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 ALPIP09923 528 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 RARAP10276 462 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 GM2AP17900 193 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 ZNF135P52742 658 aaPredicted RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 AP1S1P61966 158 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 NSUN2Q08J23 767 aaKnown RBP eCLIP21.65■■□□□ 1.06
USP40-215ENST00000484528 ACOX1Q15067 660 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 TMCO3Q6UWJ1 677 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 LUZP1Q86V48 1076 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 LSMEM2Q8N112 164 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 LZTR1Q8N653 840 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 ARL10Q8N8L6 244 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 TPCN2Q8NHX9 752 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 PDCD6IPQ8WUM4 868 aaKnown RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 SCG3Q8WXD2 468 aaKnown RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 OR1E3Q8WZA6 343 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 FUBP1Q96AE4 644 aaKnown RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 CCDC74AQ96AQ1 378 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 HIC2Q96JB3 615 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 CSPG4P5Q96PW8 444 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 UBL7Q96S82 380 aaPredicted RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 CBX8Q9HC52 389 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 FGF22Q9HCT0 170 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 MRPL40Q9NQ50 206 aaKnown RBP21.65■■□□□ 1.06
USP40-215ENST00000484528 B4GALT6Q9UBX8 382 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 RABGEF1Q9UJ41 708 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 PCDHGC4Q9Y5F7 938 aa21.65■■□□□ 1.06
USP40-215ENST00000484528 SYCE3A1L190 88 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 DXOO77932 396 aaKnown RBP21.64■■□□□ 1.05
USP40-215ENST00000484528 RENBPP51606 427 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 PDX1P52945 283 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 CXADRP78310 365 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 FANCCQ00597 558 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 SPIDRQ14159 915 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 FIGNQ5HY92 759 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 POLNQ7Z5Q5 900 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 GKN2Q86XP6 184 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 PELI3Q8N2H9 469 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 PGBD5Q8N414 524 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 ATL2Q8NHH9 583 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 CPLX3Q8WVH0 158 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 ZNF599Q96NL3 588 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 THAP2Q9H0W7 228 aa21.64■■□□□ 1.05
USP40-215ENST00000484528 CACNB4O00305 520 aaPredicted RBP21.63■■□□□ 1.05
USP40-215ENST00000484528 TCEA3O75764 348 aa21.63■■□□□ 1.05
USP40-215ENST00000484528 PEX11BO96011 259 aa21.63■■□□□ 1.05
USP40-215ENST00000484528 PRB1P04280 392 aa21.63■■□□□ 1.05
USP40-215ENST00000484528 MAXP61244 160 aa21.63■■□□□ 1.05
USP40-215ENST00000484528 POLR2LP62875 67 aaKnown RBP21.63■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms