RNA–Protein interactions for RNA: ENST00000478934.5

VPS52-217, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 2

Gene VPS52, Length 2,602 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-217ENST00000478934 PSMD13Q9UNM6 376 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 NT5C1B-RDH14C9J2C7 533 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 CAPN15O75808 1086 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 SNUPNO95149 360 aaKnown RBP10.86□□□□□ -0.67
VPS52-217ENST00000478934 COL6A2P12110 1019 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 CHN2P52757 468 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 YBX1P67809 324 aaKnown RBP10.86□□□□□ -0.67
VPS52-217ENST00000478934 ZNF33AQ06730 810 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 C16orf89Q6UX73 402 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 RSPO2Q6UXX9 243 aaPredicted RBP10.86□□□□□ -0.67
VPS52-217ENST00000478934 CILP2Q8IUL8 1156 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 NUP93Q8N1F7 819 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 ARRDC2Q8TBH0 407 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 SOCS4Q8WXH5 440 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 PTERQ96BW5 349 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 CENPKQ9BS16 269 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 GRIP2Q9C0E4 1043 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 SP110Q9HB58 689 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 PRDM5Q9NQX1 630 aaPredicted RBP10.86□□□□□ -0.67
VPS52-217ENST00000478934 MID2Q9UJV3 735 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 DSEQ9UL01 958 aa10.86□□□□□ -0.67
VPS52-217ENST00000478934 NLRC5Q86WI3 1866 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 A0A0D9SEW6 157 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 A0A1B0GTL3 188 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 E7ENX8 843 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 FBP2O00757 339 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 RNASEH2AO75792 299 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 S1PR4O95977 384 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 CHRM1P11229 460 aaPredicted RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 PAMP19021 973 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 KCNQ1P51787 676 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 TIAL1Q01085 375 aaKnown RBP eCLIP10.85□□□□□ -0.67
VPS52-217ENST00000478934 POU4F1Q01851 419 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 BIRC2Q13490 618 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 IRF5Q13568 498 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 IL23RQ5VWK5 629 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 AP1ARQ63HQ0 302 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 TIGD7Q6NT04 549 aaPredicted RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 ZNF549Q6P9A3 640 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 SCML4Q8N228 414 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 NAT14Q8WUY8 206 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 LRCH3Q96II8 777 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 SERPINB11Q96P15 392 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 SEMA3CQ99985 751 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 TRIM8Q9BZR9 551 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 ZYG11BQ9C0D3 744 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 CCSER2Q9H7U1 834 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 ATP13A1Q9HD20 1204 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 TBC1D13Q9NVG8 400 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 VWA7Q9Y334 891 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 AP4B1Q9Y6B7 739 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 HEATR9A2RTY3 570 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 AP3B1O00203 1094 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 LDB2O43679 373 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 IPO13O94829 963 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 SUPT7LO94864 414 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 LTA4HP09960 611 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 ATXN1LP0C7T5 689 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 SMIM18P0DKX4 95 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 LEPRP48357 1165 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 PRKAA2P54646 552 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 FOXA1P55317 472 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 PFKPQ01813 784 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 TAF10Q12962 218 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 PDAP1Q13442 181 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 MAPRE1Q15691 268 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 FAM83EQ2M2I3 478 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 AGKQ53H12 422 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 C10orf120Q5SQS8 335 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 MON1AQ86VX9 555 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 MFN1Q8IWA4 741 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 UMODL1-AS1Q8N2C9 162 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 METTL25Q8N6Q8 603 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 GIPC2Q8TF65 315 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 EXOC2Q96KP1 924 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 NSUN5Q96P11 429 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 RPRD1AQ96P16 312 aaPredicted RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 KCNA7Q96RP8 456 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 PRPF18Q99633 342 aaKnown RBP10.85□□□□□ -0.67
VPS52-217ENST00000478934 VCX3BQ9H321 246 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 IL1RL2Q9HB29 575 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 SPC25Q9HBM1 224 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 VTI1BQ9UEU0 232 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 RIMS3Q9UJD0 308 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 TLR6Q9Y2C9 796 aa10.85□□□□□ -0.67
VPS52-217ENST00000478934 TDRD15B5MCY1 1934 aaKnown RBP10.84□□□□□ -0.67
VPS52-217ENST00000478934 A0A087X1B8 175 aa10.84□□□□□ -0.67
VPS52-217ENST00000478934 SLC12A8A0AV02 714 aa10.84□□□□□ -0.67
VPS52-217ENST00000478934 MANSC4A6NHS7 340 aaPredicted RBP10.84□□□□□ -0.67
VPS52-217ENST00000478934 SCAMP3O14828 347 aaKnown RBP10.84□□□□□ -0.67
VPS52-217ENST00000478934 CASQ2O14958 399 aaPredicted RBP10.84□□□□□ -0.67
VPS52-217ENST00000478934 ME2P23368 584 aa10.84□□□□□ -0.67
VPS52-217ENST00000478934 RPL10P27635 214 aaKnown RBP10.84□□□□□ -0.67
VPS52-217ENST00000478934 RENBPP51606 427 aa10.84□□□□□ -0.67
VPS52-217ENST00000478934 ADGRE1Q14246 886 aa10.84□□□□□ -0.67
VPS52-217ENST00000478934 PTK2BQ14289 1009 aa10.84□□□□□ -0.67
VPS52-217ENST00000478934 TRIM71Q2Q1W2 868 aaKnown RBP10.84□□□□□ -0.67
VPS52-217ENST00000478934 VARS2Q5ST30 1063 aaKnown RBP10.84□□□□□ -0.67
VPS52-217ENST00000478934 ISCA2Q86U28 154 aa10.84□□□□□ -0.67
VPS52-217ENST00000478934 PELI3Q8N2H9 469 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms