RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 ZCCHC9Q8N567 271 aaKnown RBP5.31□□□□□ -1.56
UPF3B-203ENST00000478840 MINDY1Q8N5J2 469 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 CMASQ8NFW8 434 aaPredicted RBP5.31□□□□□ -1.56
UPF3B-203ENST00000478840 SLC41A2Q96JW4 573 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 PPP1R13BQ96KQ4 1090 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 FAM110AQ9BQ89 295 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 KLHL4Q9C0H6 718 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 CDT1Q9H211 546 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 MVB12BQ9H7P6 319 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 BPIFA1Q9NP55 256 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 DECR2Q9NUI1 292 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 ANKRD10Q9NXR5 420 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 ANAPC2Q9UJX6 822 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 CEPT1Q9Y6K0 416 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 SLC4A4Q9Y6R1 1079 aa5.31□□□□□ -1.56
UPF3B-203ENST00000478840 TYW5A2RUC4 315 aaKnown RBP5.3□□□□□ -1.56
UPF3B-203ENST00000478840 HSPB6O14558 160 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 ADAMDEC1O15204 470 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 PROP1O75360 226 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 MMP3P08254 477 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 ETFAP13804 333 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 IL7RP16871 459 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 TRIM21P19474 475 aaKnown RBP5.3□□□□□ -1.56
UPF3B-203ENST00000478840 ACADLP28330 430 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 CLCN3P51790 818 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 ZNF41P51814 821 aaPredicted RBP5.3□□□□□ -1.56
UPF3B-203ENST00000478840 NAB2Q15742 525 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 CDONQ4KMG0 1287 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 ENTPD8Q5MY95 495 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 IL27RAQ6UWB1 636 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 LCTLQ6UWM7 567 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 SLFN11Q7Z7L1 901 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 NOXA1Q86UR1 476 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 GALNT13Q8IUC8 556 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 WDR63Q8IWG1 891 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 MCEMP1Q8IX19 187 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 HJURPQ8NCD3 748 aaPredicted RBP5.3□□□□□ -1.56
UPF3B-203ENST00000478840 HUS1BQ8NHY5 278 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 ZNF653Q96CK0 615 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 TMCO6Q96DC7 493 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 ZC3HAV1LQ96H79 300 aaKnown RBP5.3□□□□□ -1.56
UPF3B-203ENST00000478840 TMEM47Q9BQJ4 181 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 TUBB6Q9BUF5 446 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 KIFC3Q9BVG8 833 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 HRH4Q9H3N8 390 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 PSD3Q9NYI0 1048 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 UTS2RQ9UKP6 389 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 AGO2Q9UKV8 859 aaKnown RBP5.3□□□□□ -1.56
UPF3B-203ENST00000478840 CMAHPQ9Y471 501 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 TRPV2Q9Y5S1 764 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 MAU2Q9Y6X3 613 aa5.3□□□□□ -1.56
UPF3B-203ENST00000478840 TRBV5-3A0A0A0MS03 114 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 hCG_1809904A0A1W2PP81 198 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 A0A1W2PPE2 198 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 A0A1W2PR64 198 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 TCRBV21S2A2A0A5A6 115 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 F8W810 466 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 PRPF4O43172 522 aaKnown RBP eCLIP5.29□□□□□ -1.56
UPF3B-203ENST00000478840 TBCAO75347 108 aaKnown RBP5.29□□□□□ -1.56
UPF3B-203ENST00000478840 C1QL1O75973 258 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 AFPP02771 609 aaKnown RBP5.29□□□□□ -1.56
UPF3B-203ENST00000478840 MMP2P08253 660 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 PROZP22891 400 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 CIITAP33076 1130 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 CAPZA2P47755 286 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 LIG4P49917 911 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 FAM27E3Q08E93 113 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 TFCP2Q12800 502 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 GRAPQ13588 217 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 CRY2Q49AN0 593 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 MIDNQ504T8 468 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 ESCO2Q56NI9 601 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 RARS2Q5T160 578 aaKnown RBP5.29□□□□□ -1.56
UPF3B-203ENST00000478840 LINGO2Q7L985 606 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 PLPPR4Q7Z2D5 763 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 GALNTL5Q7Z4T8 443 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 LURAP1LQ8IV03 231 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 SLC35F3Q8IY50 421 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 ADGRF4Q8IZF3 695 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 RBFAQ8N0V3 343 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 GPATCH11Q8N954 259 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 KDM1BQ8NB78 822 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 BEST2Q8NFU1 509 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 SEMA6DQ8NFY4 1073 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 ZNF622Q969S3 477 aaKnown RBP eCLIP5.29□□□□□ -1.563e-9■■■■□ 19.9
UPF3B-203ENST00000478840 ZNF333Q96JL9 665 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 SPATA17Q96L03 361 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 DGAT2Q96PD7 388 aa5.29□□□□□ -1.56
UPF3B-203ENST00000478840 WDR83Q9BRX9 315 aaKnown RBP5.29□□□□□ -1.56
UPF3B-203ENST00000478840 DENND2DQ9H6A0 471 aaPredicted RBP5.29□□□□□ -1.56
UPF3B-203ENST00000478840 PLEKHB1Q9UF11 243 aaPredicted RBP5.29□□□□□ -1.56
UPF3B-203ENST00000478840 A0A087X1B8 175 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 LOC102723996A0A087X1L8 192 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 A0A1B0GVM2 712 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 UGDHO60701 494 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 JRKO75564 520 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 CHATP28329 748 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 DCTDP32321 178 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 TNFSF8P32971 234 aa5.28□□□□□ -1.56
UPF3B-203ENST00000478840 CLCN5P51795 746 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms