RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 TYW5A2RUC4 315 aaKnown RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 TCAF2A6NFQ2 919 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 PIK3R2O00459 728 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 KIAA0391O15091 583 aaKnown RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 CLIC2O15247 247 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 PHACTR2O75167 634 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 WISP2O76076 250 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 SIX3O95343 332 aaPredicted RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 CD160O95971 181 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 TNFP01375 233 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 EDN3P14138 238 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 CD58P19256 250 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 PCSK6P29122 969 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 GARSP41250 739 aaKnown RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 GLRBP48167 497 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 TDGF1P3P51864 188 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 CCNHP51946 323 aaPredicted RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 NDST2P52849 883 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 RAD23BP54727 409 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 PPP2R2AP63151 447 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 CSNK1G2P78368 415 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 CCDC15Q0P6D6 951 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 NNTQ13423 1086 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 BIRC3Q13489 604 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 EIF4EBP2Q13542 120 aaPredicted RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 ZACNQ401N2 412 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 ZC3H12AQ5D1E8 599 aaKnown RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 FBXL22Q6P050 247 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 IGFL3Q6UXB1 125 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 ZNF765Q7L2R6 523 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 TAC4Q86UU9 113 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 HPS6Q86YV9 775 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 ANKRD52Q8NB46 1076 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 ATP11CQ8NB49 1132 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 PARD3BQ8TEW8 1205 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 ZDHHC1Q8WTX9 485 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 NUDT8Q8WV74 236 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 FAR1Q8WVX9 515 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 TAF4BQ92750 862 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 C8orf76Q96K31 380 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 WDR92Q96MX6 357 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 SPOCK3Q9BQ16 436 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 WRAP53Q9BUR4 548 aaKnown RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 LGR4Q9BXB1 951 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 ILKAPQ9H0C8 392 aaPredicted RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 ENKD1Q9H0I2 346 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 LIME1Q9H400 295 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 LHX9Q9NQ69 397 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 TAAR2Q9P1P5 351 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 VPS28Q9UK41 221 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 NOL7Q9UMY1 257 aaKnown RBP4.82□□□□□ -1.64
USP4-209ENST00000475873 TLR6Q9Y2C9 796 aa4.82□□□□□ -1.64
USP4-209ENST00000475873 A0A0U1RQS6 177 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 C21orf140B9A014 251 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 NEMP1O14524 444 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 TOR1BO14657 336 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 XPO1O14980 1071 aaKnown RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 ZMPSTE24O75844 475 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 TM7SF2O76062 418 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 TMEM63AO94886 807 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 NDUFA10O95299 355 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 EML2O95834 649 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 LY6G6DO95868 133 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 IGLV3-25P01717 112 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 HLA-DRAP01903 254 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 PCCBP05166 539 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 HEXAP06865 529 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 PRR29P0C7W0 189 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 CCNB1P14635 433 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 IDEP14735 1019 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 GAP43P17677 238 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 LPOP22079 712 aaPredicted RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 PTPN4P29074 926 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 STAT1P42224 750 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 GFERP55789 205 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 LRRC14Q15048 493 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 CEBPEQ15744 281 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 GOLGA7BQ2TAP0 167 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 EFHC1Q5JVL4 640 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 VWA5B1Q5TIE3 1220 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 SYPL2Q5VXT5 272 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 ARHGAP17Q68EM7 881 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 ZNF324BQ6AW86 544 aaPredicted RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 LCN10Q6JVE6 187 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 CLEC9AQ6UXN8 241 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 NCCRP1Q6ZVX7 275 aaPredicted RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 EPM2AIP1Q7L775 607 aaPredicted RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 SYVN1Q86TM6 617 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 ZSCAN30Q86W11 494 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 KRTAP1-3Q8IUG1 177 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 SCML4Q8N228 414 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 CHDHQ8NE62 594 aaPredicted RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 WFDC11Q8NEX6 87 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 OR56A4Q8NGH8 313 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 DNAJB8Q8NHS0 232 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 KIAA1524Q8TCG1 905 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 CHTF18Q8WVB6 975 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 MTFMTQ96DP5 389 aaKnown RBP4.81□□□□□ -1.64
USP4-209ENST00000475873 STAMBPL1Q96FJ0 436 aa4.81□□□□□ -1.64
USP4-209ENST00000475873 PPP1R16AQ96I34 528 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms