RNA–Protein interactions for RNA: ENST00000470094.1

BRCA2-202, Transcript of BRCA2, DNA repair associated, humanhuman

TSL 5

Gene BRCA2, Length 842 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA2-202ENST00000470094 PGBD5Q8N414 524 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 ZCCHC9Q8N567 271 aaKnown RBP4.02□□□□□ -1.77
BRCA2-202ENST00000470094 SMRP1Q8NCR6 262 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 LMO3Q8TAP4 145 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 ADGRG7Q96K78 797 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 TBATAQ96M53 351 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 ZNF570Q96NI8 536 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 H2AFJQ9BTM1 129 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 IL25Q9H293 177 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 BPIFA1Q9NP55 256 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 SARDHQ9UL12 918 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 CDC14AQ9UNH5 594 aa4.02□□□□□ -1.77
BRCA2-202ENST00000470094 GAGE7O76087 117 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 AGR2O95994 175 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 MMP2P08253 660 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 GAGE12FP0CL80 117 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 GAGE12GP0CL81 117 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 GAGE12IP0CL82 117 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 IGHV4-30-4P0DP06 118 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 AGAP20933 346 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 ABCD3P28288 659 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 SSTR2P30874 369 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 ABCD1P33897 745 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 GABRB2P47870 512 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 ECT2LQ008S8 904 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 LMOD3Q0VAK6 560 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 NEXNQ0ZGT2 675 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 GRSF1Q12849 480 aaKnown RBP eCLIP4.01□□□□□ -1.77
BRCA2-202ENST00000470094 GAGE1Q13065 139 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 GAGE4Q13068 117 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 MAPRE1Q15691 268 aaKnown RBP4.01□□□□□ -1.77
BRCA2-202ENST00000470094 SLC9B1Q4ZJI4 515 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 PPP6R3Q5H9R7 873 aaPredicted RBP4.01□□□□□ -1.77
BRCA2-202ENST00000470094 FAM69BQ5VUD6 431 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 JAKMIP3Q5VZ66 844 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 SPSB3Q6PJ21 355 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 CLEC4GQ6UXB4 293 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 AGBL3Q8NEM8 1001 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 IL17REQ8NFR9 667 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 BEST2Q8NFU1 509 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 LILRB1Q8NHL6 650 aaPredicted RBP4.01□□□□□ -1.77
BRCA2-202ENST00000470094 NFKBIDQ8NI38 313 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 DUX5Q96PT3 197 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 C1QTNF4Q9BXJ3 329 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 MAGEE1Q9HCI5 957 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 TERF2IPQ9NYB0 399 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 SLC9A2Q9UBY0 812 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 SLCO3A1Q9UIG8 710 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 A4GNTQ9UNA3 340 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 CYP46A1Q9Y6A2 500 aa4.01□□□□□ -1.77
BRCA2-202ENST00000470094 ATXN2Q99700 1313 aaKnown RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 DOCK7Q96N67 2140 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 CPED1A4D0V7 1026 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 SRRM3A6NNA2 597 aaPredicted RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 SMTNL1A8MU46 457 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 NPIPB11E5RHQ5 1161 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 PRR23D1E9PI22 279 aaPredicted RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 SLC16A5O15375 505 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 F9P00740 461 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 PRR23D2P0DMB1 279 aaPredicted RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 HNRNPH1P31943 449 aaKnown RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 STX2P32856 288 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 CTCFP49711 727 aaPredicted RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 COMPP49747 757 aaPredicted RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 TUBP50607 506 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 RPL36AP83881 106 aaKnown RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 COASYQ13057 564 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 SNTA1Q13424 505 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 SF3B4Q15427 424 aaKnown RBP eCLIP4□□□□□ -1.77
BRCA2-202ENST00000470094 PRICKLE4Q2TBC4 344 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 MMEL1Q495T6 779 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 RHBDF2Q6PJF5 856 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 LCTLQ6UWM7 567 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 LIN28BQ6ZN17 250 aaKnown RBP eCLIP4□□□□□ -1.77
BRCA2-202ENST00000470094 SLC46A3Q7Z3Q1 461 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 ARMC8Q8IUR7 673 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 DSELQ8IZU8 1212 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 RBMXL3Q8N7X1 1067 aaKnown RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 ZNF114Q8NC26 417 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 CREB3L4Q8TEY5 395 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 SAAL1Q96ER3 474 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 IGSF21Q96ID5 467 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 PAIP1Q9H074 479 aaKnown RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 SLC25A18Q9H1K4 315 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 DDX4Q9NQI0 724 aaKnown RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 MALT1Q9UDY8 824 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 LSM4Q9Y4Z0 139 aaKnown RBP4□□□□□ -1.77
BRCA2-202ENST00000470094 SNX9Q9Y5X1 595 aa4□□□□□ -1.77
BRCA2-202ENST00000470094 A0A1B0GVC2 190 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 A6NLC8 198 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 LDLRAD4O15165 306 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 SHMT1P34896 483 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 GNAQP50148 359 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 EEF1A2Q05639 463 aaKnown RBP3.99□□□□□ -1.77
BRCA2-202ENST00000470094 DLG1Q12959 904 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 PTP4A2Q12974 167 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 SIM2Q14190 667 aaPredicted RBP3.99□□□□□ -1.77
BRCA2-202ENST00000470094 EFNB3Q15768 340 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 AMZ1Q400G9 498 aa3.99□□□□□ -1.77
BRCA2-202ENST00000470094 SGO1Q5FBB7 561 aa3.99□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms