RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 RILPQ96NA2 401 aa18.35■□□□□ 0.53
COL9A3-205ENST00000466192 SORT1Q99523 831 aa18.35■□□□□ 0.53
COL9A3-205ENST00000466192 TDRD1Q9BXT4 1180 aaKnown RBP18.35■□□□□ 0.53
COL9A3-205ENST00000466192 MFSD1Q9H3U5 465 aa18.35■□□□□ 0.53
COL9A3-205ENST00000466192 SUDS3Q9H7L9 328 aaPredicted RBP18.35■□□□□ 0.53
COL9A3-205ENST00000466192 VPS51Q9UID3 782 aa18.35■□□□□ 0.53
COL9A3-205ENST00000466192 ANKRD6Q9Y2G4 727 aa18.35■□□□□ 0.53
COL9A3-205ENST00000466192 TK2O00142 265 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 ATP6V1G2O95670 118 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 PDHA1P08559 390 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 SYN1P17600 705 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 LEPRP48357 1165 aaKnown RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 POLD2P49005 469 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 MNAT1P51948 309 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 TAS2R39P59534 338 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 RAB10P61026 200 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 PRAMEP78395 509 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 SLC12A1Q13621 1099 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 RBM20Q5T481 1227 aaKnown RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 NAPRTQ6XQN6 538 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 LDB1Q86U70 411 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 CILP2Q8IUL8 1156 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 MFN1Q8IWA4 741 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 C7orf61Q8IZ16 206 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 CENPLQ8N0S6 344 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 OR13C4Q8NGS5 318 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 KCTD4Q8WVF5 259 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 ELMO2Q96JJ3 720 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 TSNARE1Q96NA8 513 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 GCNAQ96QF7 691 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 C17orf80Q9BSJ5 609 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 PLK2Q9NYY3 685 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 MARCH4Q9P2E8 410 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 LHX3Q9UBR4 397 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 PCDHGC4Q9Y5F7 938 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 SPO11Q9Y5K1 396 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 LEFTY2O00292 366 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 RFPL2O75678 378 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 STMN1P16949 149 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 CES1P23141 567 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 ABCE1P61221 599 aaKnown RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 APCDD1Q8J025 514 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 CPXM2Q8N436 756 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 PEX13Q92968 403 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 RAB3IPQ96QF0 476 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 SMIM14Q96QK8 99 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 OMDQ99983 421 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 CXorf56Q9H5V9 222 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 TLR9Q9NR96 1032 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 PNPOQ9NVS9 261 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 DNMT3BQ9UBC3 853 aaKnown RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 CLEC4EQ9ULY5 219 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 RUVBL2Q9Y230 463 aaKnown RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 ACOT9Q9Y305 439 aa18.34■□□□□ 0.53
COL9A3-205ENST00000466192 ARIH1Q9Y4X5 557 aaPredicted RBP18.34■□□□□ 0.53
COL9A3-205ENST00000466192 CDH23Q9H251 3354 aa18.33■□□□□ 0.53
COL9A3-205ENST00000466192 PALM2-AKAP2B1ALY0 433 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-205ENST00000466192 MT-CO1P00395 513 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 HSPA1AP0DMV8 641 aaKnown RBP18.33■□□□□ 0.52
COL9A3-205ENST00000466192 HSPA1BP0DMV9 641 aaKnown RBP18.33■□□□□ 0.52
COL9A3-205ENST00000466192 INO80DQ53TQ3 878 aaPredicted RBP18.33■□□□□ 0.52
COL9A3-205ENST00000466192 SPATA6LQ8N4H0 392 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 TMEM151AQ8N4L1 468 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 PHOSPHO2Q8TCD6 241 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 RMDN1Q96DB5 314 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 TCEAL4Q96EI5 215 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 SCYL1Q96KG9 808 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 NDNQ99608 321 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 TBC1D10AQ9BXI6 508 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 UNKQ9C0B0 810 aaKnown RBP18.33■□□□□ 0.52
COL9A3-205ENST00000466192 ZNF510Q9Y2H8 683 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 FCF1Q9Y324 198 aaKnown RBP18.33■□□□□ 0.52
COL9A3-205ENST00000466192 RAI2Q9Y5P3 530 aa18.33■□□□□ 0.52
COL9A3-205ENST00000466192 LINC01553A4QN01 128 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 LAMB3Q13751 1172 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 TPGS1Q6ZTW0 290 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 DCAF4L2Q8NA75 395 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 OR6Y1Q8NGX8 325 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 GABPB2Q8TAK5 448 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-205ENST00000466192 SHKBP1Q8TBC3 707 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 PTCD3Q96EY7 689 aaKnown RBP18.32■□□□□ 0.52
COL9A3-205ENST00000466192 NSL1Q96IY1 281 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 LNPEPQ9UIQ6 1025 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 CCL26Q9Y258 94 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 CCDC162PA2VCL2 907 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 TRAFD1O14545 582 aaPredicted RBP18.32■□□□□ 0.52
COL9A3-205ENST00000466192 TRIM13O60858 407 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 ARHGEF15O94989 841 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 S1PR4O95977 384 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 GOT2P00505 430 aaKnown RBP18.32■□□□□ 0.52
COL9A3-205ENST00000466192 SBK3P0C264 359 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 PTPN4P29074 926 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 IRS1P35568 1242 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 POU4F1Q01851 419 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 NSUN2Q08J23 767 aaKnown RBP eCLIP18.32■□□□□ 0.52
COL9A3-205ENST00000466192 TRAF2Q12933 501 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 NCEH1Q6PIU2 408 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 GALNT7Q86SF2 657 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 SPNS2Q8IVW8 549 aa18.32■□□□□ 0.52
COL9A3-205ENST00000466192 MICAL1Q8TDZ2 1067 aa18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms