RNA–Protein interactions for RNA: ENST00000466048.6

USP54-210, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 4,674 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-210ENST00000466048 TYK2P29597 1187 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 AKT1P31749 480 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 SLC5A3P53794 718 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 CCDC142Q17RM4 750 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 SYTL3Q4VX76 610 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 ARMCX4Q5H9R4 360 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 MRNIPQ6NTE8 343 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 OOSP2Q86WS3 158 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 HERVK_113Q902F9 699 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 RMND5BQ96G75 393 aaPredicted RBP7.71□□□□□ -1.18
USP54-210ENST00000466048 VPS11Q9H270 941 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 NKX2-4Q9H2Z4 354 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 ARHGEF38Q9NXL2 777 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 HSFX1Q9UBD0 423 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 TEX264Q9Y6I9 313 aa7.71□□□□□ -1.18
USP54-210ENST00000466048 DCLK1O15075 740 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 H2AFYO75367 372 aaKnown RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 UNC5CO95185 931 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 POLBP06746 335 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 KELP23276 732 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 ARL4DP49703 201 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 BCL2L1Q07817 233 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 FCHO2Q0JRZ9 810 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SLC12A1Q13621 1099 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 KIAA0319Q5VV43 1072 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 TAC4Q86UU9 113 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 GALNT4Q8N4A0 578 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 ZMIZ2Q8NF64 920 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SLC44A1Q8WWI5 657 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 P2RY11Q96G91 374 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 APOL4Q9BPW4 351 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 TRMT61BQ9BVS5 477 aaKnown RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 CFAP97Q9P2B7 532 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 MYRFQ9Y2G1 1151 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 ANGPT2O15123 496 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 TRIM24O15164 1050 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 APOA4P06727 396 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 HIST1H2AGP0C0S8 130 aaPredicted RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 ALADP13716 330 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 HIST1H2ADP20671 130 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 GALNT2Q10471 571 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 DDR2Q16832 855 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 RSBN1Q5VWQ0 802 aaPredicted RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 LHX8Q68G74 356 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 MSANTD2Q6P1R3 559 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 TDHQ8IZJ6 230 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 ZNF786Q8N393 782 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 DLG3Q92796 817 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 NCLNQ969V3 563 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 HIST1H2AHQ96KK5 128 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 PWWP2AQ96N64 755 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 PKMYT1Q99640 499 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 HIST1H2AJQ99878 128 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 RTP3Q9BQQ7 232 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 H2AFJQ9BTM1 129 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 PRDM12Q9H4Q4 367 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 MAN1C1Q9NR34 630 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 DUS2Q9NX74 493 aaKnown RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 KIF17Q9P2E2 1029 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 KIAA0100Q14667 2235 aaKnown RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 USP1O94782 785 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SEC24DO94855 1032 aaPredicted RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 DRD4P21917 467 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 CCNCP24863 283 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SOX6P35712 828 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 NRIP1P48552 1158 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 MAPKAPK2P49137 400 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 CHN2P52757 468 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 CLLU1OSQ5K130 101 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 USP45Q70EL2 814 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 OR10T2Q8NGX3 314 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 CYGBQ8WWM9 190 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 BORCS5Q969J3 196 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SPATA17Q96L03 361 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 C1orf74Q96LT6 269 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 NELL2Q99435 816 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 POLR1EQ9GZS1 481 aaKnown RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 GTSE1Q9NYZ3 720 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 CRLS1Q9UJA2 301 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 AURKCQ9UQB9 309 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SOBPA7XYQ1 873 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SNX3O60493 162 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 SNX2O60749 519 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 PSMG1O95456 288 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 HAPLN1P10915 354 aaPredicted RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 IMPDH2P12268 514 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 ENO3P13929 434 aaPredicted RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 TFE3P19532 575 aaPredicted RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 SSTR1P30872 391 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 HADHAP40939 763 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 IL12RB1P42701 662 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 CDK7P50613 346 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 RAB33AQ14088 237 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 ZDHHC20Q5W0Z9 365 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 HFE2Q6ZVN8 426 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 CEP68Q76N32 757 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 DNAJB7Q7Z6W7 309 aaPredicted RBP7.7□□□□□ -1.18
USP54-210ENST00000466048 CLEC4FQ8N1N0 589 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 PHC3Q8NDX5 983 aa7.7□□□□□ -1.18
USP54-210ENST00000466048 C19orf60Q96EN9 201 aa7.7□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms