RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 PLA2G15Q8NCC3 412 aa18.96■□□□□ 0.63
SF3A1-205ENST00000463818 TPCN2Q8NHX9 752 aa18.96■□□□□ 0.63
SF3A1-205ENST00000463818 SNIP1Q8TAD8 396 aaKnown RBP18.96■□□□□ 0.63
SF3A1-205ENST00000463818 CSPG4P5Q96PW8 444 aa18.96■□□□□ 0.63
SF3A1-205ENST00000463818 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.96■□□□□ 0.63
SF3A1-205ENST00000463818 IP6K2Q9UHH9 426 aa18.96■□□□□ 0.63
SF3A1-205ENST00000463818 DOLKQ9UPQ8 538 aa18.96■□□□□ 0.63
SF3A1-205ENST00000463818 CELSR3Q9NYQ7 3312 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 A0A087X0T9 212 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 A8MX80 341 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 RASGRP1O95267 797 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 MPOP05164 745 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 CYP1A2P05177 515 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 FAM228BP0C875 321 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 SRP54P61011 504 aaKnown RBP18.95■□□□□ 0.62
SF3A1-205ENST00000463818 MTM1Q13496 603 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 ELOCQ15369 112 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 ISXQ2M1V0 245 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 TBC1D25Q3MII6 688 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 SOWAHCQ53LP3 525 aaPredicted RBP18.95■□□□□ 0.62
SF3A1-205ENST00000463818 ESRP1Q6NXG1 681 aaKnown RBP18.95■□□□□ 0.62
SF3A1-205ENST00000463818 DPPA4Q7L190 304 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 TEKT4Q8WW24 435 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 SCG3Q8WXD2 468 aaKnown RBP18.95■□□□□ 0.62
SF3A1-205ENST00000463818 NUP85Q9BW27 656 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 PCDH18Q9HCL0 1135 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 GULP1Q9UBP9 304 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 ANAPC7Q9UJX3 599 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 PADI4Q9UM07 663 aa18.95■□□□□ 0.62
SF3A1-205ENST00000463818 LUC7L2Q9Y383 392 aaKnown RBP18.95■□□□□ 0.62
SF3A1-205ENST00000463818 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP18.94■□□□□ 0.62
SF3A1-205ENST00000463818 GOLGA6L19H0YKK7 550 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 MAFKO60675 156 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 PEX11BO96011 259 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 TNFP01375 233 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 ALPIP09923 528 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 ELFN1P0C7U0 828 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 LSSP48449 732 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 ZNF235Q14590 738 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 TCEA2Q15560 299 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 CCDC122Q5T0U0 273 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 ALKBH5Q6P6C2 394 aaKnown RBP18.94■□□□□ 0.62
SF3A1-205ENST00000463818 LVRNQ6Q4G3 990 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 PGBD5Q8N414 524 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 NIPA2Q8N8Q9 360 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 ATL2Q8NHH9 583 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 IQCDQ96DY2 449 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 WDR92Q96MX6 357 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 KLQ9UEF7 1012 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 PCDHGC4Q9Y5F7 938 aa18.94■□□□□ 0.62
SF3A1-205ENST00000463818 MYO1FO00160 1098 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 HTRA2O43464 458 aaPredicted RBP18.93■□□□□ 0.62
SF3A1-205ENST00000463818 GM2AP17900 193 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 HSPA9P38646 679 aaKnown RBP18.93■□□□□ 0.62
SF3A1-205ENST00000463818 GABREP78334 506 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 LSMEM2Q8N112 164 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 SDR16C5Q8N3Y7 309 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 NAT6Q93015 286 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 FUBP1Q96AE4 644 aaKnown RBP18.93■□□□□ 0.62
SF3A1-205ENST00000463818 NUDCD1Q96RS6 583 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 POLR1BQ9H9Y6 1135 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 NOD2Q9HC29 1040 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 IFNKQ9P0W0 207 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 B4GALT6Q9UBX8 382 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 GPR34Q9UPC5 381 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 RAI2Q9Y5P3 530 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 ITPR1Q14643 2758 aa18.93■□□□□ 0.62
SF3A1-205ENST00000463818 MYLKQ15746 1914 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 CACNB4O00305 520 aaPredicted RBP18.92■□□□□ 0.62
SF3A1-205ENST00000463818 CR2P20023 1033 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 IL4RP24394 825 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 SSR1P43307 286 aaKnown RBP18.92■□□□□ 0.62
SF3A1-205ENST00000463818 CDH6P55285 790 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 SLC25A11Q02978 314 aaKnown RBP18.92■□□□□ 0.62
SF3A1-205ENST00000463818 CCDC173Q0VFZ6 552 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 KRT81Q14533 505 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 ACOX1Q15067 660 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 KCTD16Q68DU8 428 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 RBM44Q6ZP01 1051 aaKnown RBP18.92■□□□□ 0.62
SF3A1-205ENST00000463818 GKN2Q86XP6 184 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 BBS5Q8N3I7 341 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 ATPAF2Q8N5M1 289 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 PCDH19Q8TAB3 1148 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 PDCD6IPQ8WUM4 868 aaKnown RBP18.92■□□□□ 0.62
SF3A1-205ENST00000463818 NSMCE1Q8WV22 266 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 ZNF578Q96N58 590 aaPredicted RBP18.92■□□□□ 0.62
SF3A1-205ENST00000463818 CCDC3Q9BQI4 270 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 SIRPGQ9P1W8 387 aa18.92■□□□□ 0.62
SF3A1-205ENST00000463818 A0A1W2PQ67 120 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 TMEM202A6NGA9 273 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 CASC3O15234 703 aaKnown RBP18.91■□□□□ 0.62
SF3A1-205ENST00000463818 GYPCP04921 128 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 HOXC4P09017 264 aaPredicted RBP18.91■□□□□ 0.62
SF3A1-205ENST00000463818 CASP14P31944 242 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 SERPINB6P35237 376 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 TRIM23P36406 574 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 KIAA1024LP59773 190 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 MMRN1Q13201 1228 aa18.91■□□□□ 0.62
SF3A1-205ENST00000463818 COL9A2Q14055 689 aaPredicted RBP18.91■□□□□ 0.62
SF3A1-205ENST00000463818 HADHQ16836 314 aaKnown RBP18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms