RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 PYCARDQ9ULZ3 195 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 CAPN11Q9UMQ6 739 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ENTPD4Q9Y227 616 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 ERGIC3Q9Y282 383 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 DTNAQ9Y4J8 743 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 LRRC42Q9Y546 428 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 FPGT-TNNI3KV9GXZ4 949 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 POLR2AP24928 1970 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 PAPPA2Q9BXP8 1791 aa4.86□□□□□ -1.63
CCDC88A-209ENST00000456975 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 H0Y858 1186 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 H3BQF6 201 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 RASGRF2O14827 1237 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 GFRA3O60609 400 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PPP1R11O60927 126 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 KRT75O95678 551 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 OPN1LWP04000 364 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MYBL1P10243 752 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PRPS2P11908 318 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CHRM3P20309 590 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 AMPD1P23109 780 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 GNA11P29992 359 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SLC5A2P31639 672 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PCGF2P35227 344 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 HPCAP84074 193 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 BTKQ06187 659 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CHIT1Q13231 466 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SNAPC2Q13487 334 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PMS2P11Q13670 270 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 DLGAP5Q15398 846 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 TARBP2Q15633 366 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ADIPOQQ15848 244 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 GRIK4Q16099 956 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 C20orf194Q5TEA3 1177 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CACHD1Q5VU97 1274 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 IZUMO3Q5VZ72 239 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 TAF2Q6P1X5 1199 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MAEAQ7L5Y9 396 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 RTN4RL1Q86UN2 441 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MICU3Q86XE3 530 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ZSWIM9Q86XI8 627 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CDKL3Q8IVW4 592 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MCEMP1Q8IX19 187 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 FMR1NBQ8N0W7 255 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 LIX1Q8N485 282 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PLD5Q8N7P1 536 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CNBD1Q8NA66 436 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 KCTD6Q8NC69 237 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 C11orf65Q8NCR3 313 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 TRPV1Q8NER1 839 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 AFG1LQ8WV93 481 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SSH1Q8WYL5 1049 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 LPGAT1Q92604 370 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PHKBQ93100 1093 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 RAB24Q969Q5 203 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 RILPL2Q969X0 211 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 C18orf8Q96DM3 657 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 IQCDQ96DY2 449 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 RMND5BQ96G75 393 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 C16orf92Q96LL3 132 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PTCHD1Q96NR3 888 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 FAM111AQ96PZ2 611 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 HAPLN3Q96S86 360 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 METTL22Q9BUU2 404 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 FAM192AQ9GZU8 254 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MRPL47Q9HD33 250 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 FAM114A2Q9NRY5 505 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 GID8Q9NWU2 228 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MARCH2Q9P0N8 246 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SMG5Q9UPR3 1016 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PPIL1Q9Y3C6 166 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 B3GALT1Q9Y5Z6 326 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CACNA1FO60840 1977 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 A0A0A0MRY4 1105 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 A0A0U1RQK1 487 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ZNF320A2RRD8 509 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PI4KAP2A4QPH2 592 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MAP2K7O14733 419 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SCAMP1O15126 338 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 FGF10O15520 208 aaPredicted RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CACNG3O60359 315 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SYNCRIPO60506 623 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ERAL1O75616 437 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SOAT2O75908 522 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 GGPS1O95749 300 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ASS1P00966 412 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ITGA2BP08514 1039 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MYF5P13349 255 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CPA3P15088 417 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CIITAP33076 1130 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 ERFP50548 548 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 PPP5CP53041 499 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MRPS25P82663 173 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 USP10Q14694 798 aaKnown RBP4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 SURF1Q15526 300 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CYP2A13Q16696 494 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 AOC3Q16853 763 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 TMEM266Q2M3C6 531 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 CCDC157Q569K6 752 aa4.85□□□□□ -1.63
CCDC88A-209ENST00000456975 MANEAQ5SRI9 462 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms