RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 NEU3Q9UQ49 428 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 ATP8A1Q9Y2Q0 1164 aa13.38□□□□□ -0.27
HMGB3-204ENST00000448905 SETXQ7Z333 2677 aaKnown RBP13.38□□□□□ -0.27
HMGB3-204ENST00000448905 A0A1W2PQ67 120 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 TSPAN11A1L157 253 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 CYSRT1A8MQ03 144 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 D6RAR5 112 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 PYCARD-AS1I3L0S3 204 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 CCP110O43303 1012 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 PRAMEF11O60813 436 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 CELA2BP08218 269 aaPredicted RBP13.37□□□□□ -0.27
HMGB3-204ENST00000448905 KRT10P13645 584 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 KLK7P49862 253 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 PAPOLAP51003 745 aaKnown RBP13.37□□□□□ -0.27
HMGB3-204ENST00000448905 RENBPP51606 427 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 BIRC2Q13490 618 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 PEX6Q13608 980 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 RFTN1Q14699 578 aaPredicted RBP13.37□□□□□ -0.27
HMGB3-204ENST00000448905 TCEA2Q15560 299 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 ACAD10Q6JQN1 1059 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 CCNJLQ8IV13 435 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 GPR156Q8NFN8 814 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 KIAA1524Q8TCG1 905 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 SGF29Q96ES7 293 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 MCEEQ96PE7 176 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.37□□□□□ -0.27
HMGB3-204ENST00000448905 FOXP3Q9BZS1 431 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 CLMPQ9H6B4 373 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 PARVAQ9NVD7 372 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 ACSL6Q9UKU0 697 aa13.37□□□□□ -0.27
HMGB3-204ENST00000448905 J3KR12 359 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 EEF2KO00418 725 aaKnown RBP13.36□□□□□ -0.27
HMGB3-204ENST00000448905 NUDT21O43809 227 aaKnown RBP13.36□□□□□ -0.27
HMGB3-204ENST00000448905 SLC28A2O43868 658 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 BUB1BO60566 1050 aaPredicted RBP13.36□□□□□ -0.27
HMGB3-204ENST00000448905 RNF8O76064 485 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 RECQL5O94762 991 aaPredicted RBP13.36□□□□□ -0.27
HMGB3-204ENST00000448905 ITGB2P05107 769 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 ELFN1P0C7U0 828 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 LIPCP11150 499 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 TNFAIP3P21580 790 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 MMP12P39900 470 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 KIAA1024LP59773 190 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 UBXN1Q04323 297 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 CDKAL1Q5VV42 579 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 B3GNT8Q7Z7M8 397 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 PIM3Q86V86 326 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 CINPQ9BW66 212 aaPredicted RBP13.36□□□□□ -0.27
HMGB3-204ENST00000448905 SEMA4CQ9C0C4 833 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 LRRC19Q9H756 370 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 FANCLQ9NW38 375 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 PISDQ9UG56 409 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 RABGEF1Q9UJ41 708 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 MOSPD1Q9UJG1 213 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 LOXL2Q9Y4K0 774 aa13.36□□□□□ -0.27
HMGB3-204ENST00000448905 KALRNO60229 2985 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 A0A1W2PQM1 296 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 PMS2P1A4D2B8 440 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 FERP16591 822 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 CD82P27701 267 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 TRIM23P36406 574 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 SCNN1BP51168 640 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 ZNF135P52742 658 aaPredicted RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 PDX1P52945 283 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 RPL7AP62424 266 aaKnown RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 ZFP36L1Q07352 338 aaKnown RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 ACOX1Q15067 660 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 C14orf28Q4W4Y0 310 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 MANEAQ5SRI9 462 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 CERCAMQ5T4B2 595 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 ERMARDQ5T6L9 678 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 TMCO4Q5TGY1 634 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 AFMIDQ63HM1 303 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 PNCKQ6P2M8 343 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 LIPIQ6XZB0 460 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 MON1BQ7L1V2 547 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 MCOLN2Q8IZK6 566 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 LZTR1Q8N653 840 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 TSEN2Q8NCE0 465 aaKnown RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 FUBP1Q96AE4 644 aaKnown RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 CELF6Q96J87 481 aaKnown RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 B3GNT4Q9C0J1 378 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 SLC39A8Q9C0K1 460 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 DHX35Q9H5Z1 703 aaKnown RBP13.35□□□□□ -0.27
HMGB3-204ENST00000448905 WDR26Q9H7D7 661 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 SP110Q9HB58 689 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 PDFQ9HBH1 243 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 CYP4F12Q9HCS2 524 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 SIK3Q9Y2K2 1263 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 MGAQ8IWI9 3026 aa13.35□□□□□ -0.27
HMGB3-204ENST00000448905 PTPRQQ9UMZ3 2332 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 A0A1W2PQC6 194 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 TMEM202A6NGA9 273 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 LRRC10BA6NIK2 292 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 RHPN2P1A8MT19 583 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 DFFAO00273 331 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 EPHB6O15197 1021 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 TEX33O43247 280 aa13.34□□□□□ -0.27
HMGB3-204ENST00000448905 EFSO43281 561 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms