RNA–Protein interactions for RNA: ENST00000442201.6

CCDC39-201, Transcript of coiled-coil domain containing 39, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CCDC39, Length 3,279 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-201ENST00000442201 SHROOM3Q8TF72 1996 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 PTCD2Q8WV60 388 aaKnown RBP8.14□□□□□ -1.11
CCDC39-201ENST00000442201 OSCP1Q8WVF1 389 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 RSPRY1Q96DX4 576 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 NUDCD1Q96RS6 583 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 SLC2A11Q9BYW1 496 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 PPANQ9NQ55 473 aaKnown RBP8.14□□□□□ -1.11
CCDC39-201ENST00000442201 INTS6Q9UL03 887 aaKnown RBP8.14□□□□□ -1.11
CCDC39-201ENST00000442201 CDH7Q9ULB5 785 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 TIMM22Q9Y584 194 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 TRANK1O15050 2925 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 DOCK6Q96HP0 2047 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 LOC285095A0A1B0GVY8 99 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 FAM159BA6NKW6 160 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 CCT8L1PA6NM43 557 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 GJB3O75712 270 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 MT-CO1P00395 513 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 NAT2P11245 290 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 KRT15P19012 456 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 HLA-DPA1P20036 260 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 SERPINH1P50454 418 aaKnown RBP8.14□□□□□ -1.11
CCDC39-201ENST00000442201 POLE2P56282 527 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 ANKRD20A4Q4UJ75 823 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 RNF220Q5VTB9 566 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 ADGRD1Q6QNK2 874 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 CES3Q6UWW8 571 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 SLC26A11Q86WA9 606 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 CACNA2D3Q8IZS8 1091 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.14□□□□□ -1.11
CCDC39-201ENST00000442201 SLC44A1Q8WWI5 657 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 DHRS4Q9BTZ2 278 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 CCDC28BQ9BUN5 200 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 KIFC1Q9BW19 673 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 PRO3102Q9H379 93 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 CHRAC1Q9NRG0 131 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 OBP2AQ9NY56 170 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 FCF1Q9Y324 198 aaKnown RBP8.14□□□□□ -1.11
CCDC39-201ENST00000442201 DENND4CQ5VZ89 1909 aa8.14□□□□□ -1.11
CCDC39-201ENST00000442201 CXorf51AA0A1B0GTR3 108 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 ADH1CP00326 375 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 C1QAP02745 245 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 FGF1P05230 155 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 PABPC1P11940 636 aaKnown RBP8.13□□□□□ -1.11
CCDC39-201ENST00000442201 ADRA1DP25100 572 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 KLC1Q07866 573 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 MGAT5Q09328 741 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 DMC1Q14565 340 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 DHCR24Q15392 516 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 QPCTQ16769 361 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 RALGPS1Q5JS13 557 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 IRGCQ6NXR0 463 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 TMEM53Q6P2H8 277 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 PKN3Q6P5Z2 889 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 RNF135Q8IUD6 432 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 CYP4X1Q8N118 509 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 MFSD3Q96ES6 412 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 CERS2Q96G23 380 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 LMLNQ96KR4 655 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 VCXQ9H320 206 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 TRPV4Q9HBA0 871 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 THG1LQ9NWX6 298 aaKnown RBP8.13□□□□□ -1.11
CCDC39-201ENST00000442201 LHX3Q9UBR4 397 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 ARIH1Q9Y4X5 557 aaPredicted RBP8.13□□□□□ -1.11
CCDC39-201ENST00000442201 NOTCH4Q99466 2003 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 HEPACAM2A8MVW5 462 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 K7ERQ8 282 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 NFATC1O95644 943 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 NDST3O95803 873 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 GSTT1P30711 240 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 PPP2R2AP63151 447 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 SEPT6Q14141 434 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 EML3Q32P44 896 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 SIRPB2Q5JXA9 342 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 LGSNQ5TDP6 509 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 NEPROQ6NW34 567 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 ZNF449Q6P9G9 518 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 DCAKDQ8WVC6 231 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 CLIP3Q96DZ5 547 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 FCRL3Q96P31 734 aaPredicted RBP8.13□□□□□ -1.11
CCDC39-201ENST00000442201 CGREF1Q99674 301 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 ZFP14Q9HCL3 533 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 SENP1Q9P0U3 644 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 TCAF1Q9Y4C2 921 aa8.13□□□□□ -1.11
CCDC39-201ENST00000442201 IQANK1A0A1B0GTG1 560 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ZCWPW2A0A1B0GU75 182 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 HEATR9A2RTY3 570 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CXorf49A8MYA2 514 aaPredicted RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CYP17A1P05093 508 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ATXN1LP0C7T5 689 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ADH5P11766 374 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 NQO1P15559 274 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 CA4P22748 312 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 HOXD11P31277 338 aaPredicted RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ATP1A2P50993 1020 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 AP1S1P61966 158 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 NAB1Q13506 487 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 FRG1Q14331 258 aaKnown RBP8.12□□□□□ -1.11
CCDC39-201ENST00000442201 FUT11Q495W5 492 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 TRIM68Q6AZZ1 485 aa8.12□□□□□ -1.11
CCDC39-201ENST00000442201 ASTLQ6HA08 431 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms