RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 ZNF653Q96CK0 615 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 WDR92Q96MX6 357 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 TMEM74Q96NL1 305 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 LGMNQ99538 433 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 BOCQ9BWV1 1114 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 KLQ9UEF7 1012 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 IP6K2Q9UHH9 426 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 PCDHGA8Q9Y5G5 932 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 TRPM6Q9BX84 2022 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 ADAMTS20P59510 1910 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 FRYQ5TBA9 3013 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 BAHCC1Q9P281 2608 aa7.83□□□□□ -1.16
CD44-211ENST00000442151 TMCO5BA8MYB1 307 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 DFFAO00273 331 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 BRINP1O60477 761 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 SOCS5O75159 536 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 USP12O75317 370 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 NEBLO76041 1014 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 GJB6O95452 261 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 ELFN1P0C7U0 828 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 PNLIPP16233 465 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 ERCC2P18074 760 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 GKP32189 559 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 HK3P52790 923 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 TMPRSS3P57727 454 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 SRP54P61011 504 aaKnown RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 GABREP78334 506 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 RHDQ02161 417 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 EIF2B5Q13144 721 aaKnown RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 ZNF235Q14590 738 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 NCAPHQ15003 741 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 CDKN3Q16667 212 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 ZNF542PQ5EBM4 170 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 ARTNQ5T4W7 220 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 TMCO3Q6UWJ1 677 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 XKR5Q6UX68 686 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 LEKR1Q6ZMV7 388 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 HID1Q8IV36 788 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 MAP7D3Q8IWC1 876 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 RAVER1Q8IY67 606 aaKnown RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 PYROXD2Q8N2H3 581 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 ARL10Q8N8L6 244 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 TEKT4Q8WW24 435 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 WBP1Q96G27 269 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 WRAP53Q9BUR4 548 aaKnown RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 SLC39A8Q9C0K1 460 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 HAUS4Q9H6D7 363 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 NOL6Q9H6R4 1146 aaKnown RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 PCDH12Q9NPG4 1184 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 RCOR3Q9P2K3 495 aaPredicted RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 GULP1Q9UBP9 304 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 LHX3Q9UBR4 397 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 PCSK1NQ9UHG2 260 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 PHTF1Q9UMS5 762 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 DGKBQ9Y6T7 804 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 LAMA1P25391 3075 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 CCDC187A0A096LP49 1063 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 A0A1W2PQJ5 194 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 LRRC53A6NM62 1247 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 MYO1FO00160 1098 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 YY2O15391 372 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 SERPING1P05155 500 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 TPM1P09493 284 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 GIMD1P0DJR0 217 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 C6P13671 934 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 MIPP30301 263 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 IGFALSP35858 605 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 LIG3P49916 1009 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 CDH6P55285 790 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 KIAA1024LP59773 190 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 BIRC2Q13490 618 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 LBRQ14739 615 aaKnown RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 ISXQ2M1V0 245 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 DEFB133Q30KQ1 61 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 PPP6R3Q5H9R7 873 aaPredicted RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 TIGD7Q6NT04 549 aaPredicted RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 TTC13Q8NBP0 860 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 TP53I13Q8NBR0 393 aaPredicted RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 KIAA1524Q8TCG1 905 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 KCNE4Q8WWG9 221 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 PSKH2Q96QS6 385 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP7.82□□□□□ -1.16
CD44-211ENST00000442151 SNRNP25Q9BV90 132 aaKnown RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 ISCUQ9H1K1 167 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 PRORYQ9H606 182 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 PHPT1Q9NRX4 125 aaPredicted RBP7.82□□□□□ -1.16
CD44-211ENST00000442151 MYO1AQ9UBC5 1043 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 AMACRQ9UHK6 382 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 GPR34Q9UPC5 381 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 NEU3Q9UQ49 428 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.82□□□□□ -1.16
CD44-211ENST00000442151 ATRXP46100 2492 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 KNL1Q8NG31 2342 aa7.82□□□□□ -1.16
CD44-211ENST00000442151 KNTC1P50748 2209 aa7.81□□□□□ -1.16
CD44-211ENST00000442151 TP53BP1Q12888 1972 aaPredicted RBP7.81□□□□□ -1.16
CD44-211ENST00000442151 A0A1B0GTH6 734 aa7.81□□□□□ -1.16
CD44-211ENST00000442151 FAM170AA1A519 330 aa7.81□□□□□ -1.16
CD44-211ENST00000442151 J3KR12 359 aa7.81□□□□□ -1.16
CD44-211ENST00000442151 PSMD11O00231 422 aa7.81□□□□□ -1.16
CD44-211ENST00000442151 TSHRP16473 764 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms