RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 ATP6V1E2Q96A05 226 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 OLFM1Q99784 485 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 TRIM62Q9BVG3 475 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 ZCWPW1Q9H0M4 648 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 RNF208Q9H0X6 261 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 CATSPERBQ9H7T0 1116 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 EML4Q9HC35 981 aaKnown RBP16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 TRPC7Q9HCX4 862 aa16.49■□□□□ 0.23
CLCNKA-203ENST00000439316 IPO13O94829 963 aaKnown RBP16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 THP07101 528 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 CLCN5P51795 746 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 C1QTNF8P60827 252 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 TRAP1Q12931 704 aaKnown RBP16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 SEPT6Q14141 434 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 FASTKQ14296 549 aaKnown RBP16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 SLC14A2Q15849 920 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 LARP7Q4G0J3 582 aaKnown RBP eCLIP16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 AGAP9Q5VTM2 703 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 AFMIDQ63HM1 303 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 TIGD7Q6NT04 549 aaPredicted RBP16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 FAM171BQ6P995 826 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 ISLR2Q6UXK2 745 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 CUZD1Q86UP6 607 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 DUS3LQ96G46 650 aaKnown RBP16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 GRIP2Q9C0E4 1043 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 TBC1D13Q9NVG8 400 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 RBM22Q9NW64 420 aaKnown RBP eCLIP16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 MIOSQ9NXC5 875 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 PATJQ8NI35 1801 aa16.48■□□□□ 0.23
CLCNKA-203ENST00000439316 HEATR9A2RTY3 570 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 PDLIM1O00151 329 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 PSMD12O00232 456 aaPredicted RBP16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 UBDO15205 165 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 PAGE1O75459 146 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 LTA4HP09960 611 aaKnown RBP16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 ARSAP15289 507 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 RHDQ02161 417 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 GALNT1Q10472 559 aaPredicted RBP16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 ZNF789Q5FWF6 425 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 KLHDC10Q6PID8 442 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 TRAF7Q6Q0C0 670 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 KDELC1Q6UW63 502 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 B3GNT6Q6ZMB0 384 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 DDI1Q8WTU0 396 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 MPP4Q96JB8 637 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 ZNF597Q96LX8 424 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 PRPF18Q99633 342 aaKnown RBP16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 CYP4F12Q9HCS2 524 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 HACD3Q9P035 362 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 DMTF1Q9Y222 760 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 FIS1Q9Y3D6 152 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 AP4S1Q9Y587 144 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 TCRBV3S1A0A5B6 114 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 ASLP04424 464 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 RBP1P09455 135 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 CCL5P13501 91 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 BDNFP23560 247 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 LEPRP48357 1165 aaKnown RBP16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 LAMB3Q13751 1172 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 MBTPS1Q14703 1052 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 MYLK3Q32MK0 819 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 TIGD5Q53EQ6 642 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 AGKQ53H12 422 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 BORAQ6PGQ7 559 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 IYDQ6PHW0 289 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 ARHGAP22Q7Z5H3 698 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 EME1Q96AY2 570 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 UHRF1Q96T88 793 aaPredicted RBP16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 ADAM2Q99965 735 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 PCDHAC1Q9H158 963 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 NDFIP2Q9NV92 336 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 CD300AQ9UGN4 299 aa16.47■□□□□ 0.23
CLCNKA-203ENST00000439316 MYOCOSA0A1B0GUC4 107 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 ATP6V1B1P15313 513 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 WNT3AP56704 352 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 TXNL4AP83876 142 aaKnown RBP16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 DSC3Q14574 896 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 PPP1R3AQ16821 1122 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 C8orf82Q6P1X6 216 aaPredicted RBP16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 PAOXQ6QHF9 649 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 HACD2Q6Y1H2 254 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 AGMOQ6ZNB7 445 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 ALDH16A1Q8IZ83 802 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 RIN3Q8TB24 985 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 CALML6Q8TD86 181 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 SLCO4A1Q96BD0 722 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 TSPAN17Q96FV3 270 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 RANBP9Q96S59 729 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 PKMYT1Q99640 499 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 ACBD6Q9BR61 282 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 ATXN3LQ9H3M9 355 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 SMOC2Q9H3U7 446 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 ARNT2Q9HBZ2 717 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 SPAG4Q9NPE6 437 aa16.46■□□□□ 0.23
CLCNKA-203ENST00000439316 C7orf72A4D263 438 aa16.46■□□□□ 0.22
CLCNKA-203ENST00000439316 PRORSD1PA6NEY8 169 aa16.46■□□□□ 0.22
CLCNKA-203ENST00000439316 CASTOR2A6NHX0 329 aa16.46■□□□□ 0.22
CLCNKA-203ENST00000439316 WISP3O95389 354 aaPredicted RBP16.46■□□□□ 0.22
CLCNKA-203ENST00000439316 SNRPB2P08579 225 aaKnown RBP16.46■□□□□ 0.22
CLCNKA-203ENST00000439316 PSMC3P17980 439 aa16.46■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms