RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 A0A0J9YYE9 177 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 A0A1W2PPC4 97 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 A0A1W2PQU0 124 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3FA6NER0 549 aaPredicted RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3LB9A6J9 549 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 F5H423 210 aaPredicted RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 WNT9AO14904 365 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 CPP00450 1065 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TRBC1P01850 177 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 LMNAP02545 664 aaKnown RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 RETP07949 1114 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3HP0C7X1 549 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 ZSCAN5DPP0CG00 497 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 LHCGRP22888 699 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 RPL22P35268 128 aaKnown RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 COILP38432 576 aaPredicted RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 POLR2LP62875 67 aaKnown RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 SEMG2Q02383 582 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 CREB5Q02930 508 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 CDK18Q07002 472 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 ELF2Q15723 593 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 KCTD19Q17RG1 926 aaPredicted RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 PARP6Q2NL67 630 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3GQ6DHY5 549 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 ITPRIPL1Q6GPH6 555 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3CQ6IPX1 549 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 DENND5AQ6IQ26 1287 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 RANBP10Q6VN20 620 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 ASCL5Q7RTU5 278 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TBC1D3Q8IZP1 549 aaPredicted RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 ASB12Q8WXK4 309 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 FOXJ1Q92949 421 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 FEM1CQ96JP0 617 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 NAP1L3Q99457 506 aaPredicted RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 KLF6Q99612 283 aaPredicted RBP12.48□□□□□ -0.41
USP40-205ENST00000430158 PCDH9Q9HC56 1237 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 UBP1Q9NZI7 540 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 B4GALT6Q9UBX8 382 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 RSPH14Q9UHP6 348 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 ZNF148Q9UQR1 794 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 SCN8AQ9UQD0 1980 aa12.48□□□□□ -0.41
USP40-205ENST00000430158 TP53BP1Q12888 1972 aaPredicted RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 ADAMTS9Q9P2N4 1935 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 A0A0U1RQS6 177 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 PRR23AA6NEV1 266 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 IGLON5A6NGN9 336 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 NPIPB15A6NHN6 443 aaPredicted RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 FAM47DPA6NHR8 397 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 ANKRD66B4E2M5 251 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 ARHGAP33O14559 1287 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 RAD51BO15315 384 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 MMP20O60882 483 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 PMPCBO75439 489 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 NEBLO76041 1014 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 FSBPO95073 299 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 NDST3O95803 873 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 ALPIP09923 528 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 CD27P26842 260 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 MAOBP27338 520 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 CASQ1P31415 396 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 HNF1BP35680 557 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 DHPSP49366 369 aaPredicted RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 RPS21P63220 83 aaKnown RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 ELP6Q0PNE2 266 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 MPP3Q13368 585 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 AGERQ15109 404 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 LYSMD4Q5XG99 296 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 KIAA1161Q6NSJ0 714 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 CRTC1Q6UUV9 634 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 LIPIQ6XZB0 460 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 ARMCX6Q7L4S7 300 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 TSPAN33Q86UF1 283 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 TMEM145Q8NBT3 493 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 ATL2Q8NHH9 583 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 PDCD6IPQ8WUM4 868 aaKnown RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 MAGOHBQ96A72 148 aaKnown RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 EID2BQ96D98 161 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 TRIM44Q96DX7 344 aaPredicted RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 C16orf45Q96MC5 204 aaPredicted RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 COQ10AQ96MF6 247 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 FERMT1Q9BQL6 677 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 ARNT2Q9HBZ2 717 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 RNF14Q9UBS8 474 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 EIF2B4Q9UI10 523 aaKnown RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 TPX2Q9ULW0 747 aaKnown RBP12.47□□□□□ -0.41
USP40-205ENST00000430158 PCDHGA5Q9Y5G8 931 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 MYLKQ15746 1914 aa12.47□□□□□ -0.41
USP40-205ENST00000430158 GOLGA4Q13439 2230 aaKnown RBP12.46□□□□□ -0.41
USP40-205ENST00000430158 A0A1W2PR77 199 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 CAPN8A6NHC0 703 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 PHF2O75151 1096 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 ANXA9O76027 345 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 STK10O94804 968 aaKnown RBP12.46□□□□□ -0.41
USP40-205ENST00000430158 HEXIM1O94992 359 aaKnown RBP12.46□□□□□ -0.41
USP40-205ENST00000430158 PCDH8O95206 1070 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 AGTP01019 485 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 CTPS1P17812 591 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 VIPR1P32241 457 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 HOXD12P35452 270 aa12.46□□□□□ -0.41
USP40-205ENST00000430158 NUDT1P36639 197 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms