RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 RRN3Q9NYV6 651 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 DLGAP2Q9P1A6 1054 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 CIDEBQ9UHD4 219 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 ATP11BQ9Y2G3 1177 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 F5H5T6 163 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 UBFD1O14562 309 aaKnown RBP11.98□□□□□ -0.49
PTPRN-204ENST00000423636 TM7SF2O76062 418 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 MPOP05164 745 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 ANPEPP15144 967 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 SELPP16109 830 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 GRK2P25098 689 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 PIK3CGP48736 1102 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 KRT72Q14CN4 511 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 ANO7Q6IWH7 933 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 ZNF549Q6P9A3 640 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 EPGNQ6UW88 154 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 IMP4Q96G21 291 aaKnown RBP11.98□□□□□ -0.49
PTPRN-204ENST00000423636 BTN2A3PQ96KV6 586 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 C3orf30Q96M34 536 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 VAT1Q99536 393 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 TTPALQ9BTX7 342 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 VN1R3Q9BXE9 311 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 SLC25A51Q9H1U9 297 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 ENTPD7Q9NQZ7 604 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 CDH22Q9UJ99 828 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 VWA7Q9Y334 891 aa11.98□□□□□ -0.49
PTPRN-204ENST00000423636 SF3B1O75533 1304 aaKnown RBP eCLIP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 ARVCFO00192 962 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 TRAFD1O14545 582 aaPredicted RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 INSIG1O15503 277 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 FGF10O15520 208 aaPredicted RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 PEX2P28328 305 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 PRDX3P30048 256 aaKnown RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 WEE1P30291 646 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 ZXDBP98169 803 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 CYP4F8P98187 520 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 GRAMD1BQ3KR37 738 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 RNF219Q5W0B1 726 aaPredicted RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 TAS2R42Q7RTR8 314 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 DDIASQ8IXT1 998 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 GALNT4Q8N4A0 578 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 ARL14EPQ8N8R7 260 aaPredicted RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 TRPC4APQ8TEL6 797 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 TNKS2Q9H2K2 1166 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 ADAMTS6Q9UKP5 1117 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 CLEC4EQ9ULY5 219 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 PCDHGB4Q9UN71 923 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 PCDHGB5Q9Y5G0 923 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 A8MT66 165 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 PRRG1O14668 218 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 TOMM70O94826 608 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 XRCC1P18887 633 aaPredicted RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 TYMPP19971 482 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 HARS2P49590 506 aaKnown RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 AIF1P55008 147 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 SLC34A1Q06495 639 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 CDK18Q07002 472 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 FAM83EQ2M2I3 478 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 AAK1Q2M2I8 961 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 ZRANB3Q5FWF4 1079 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 ZYG11AQ6WRX3 759 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 SPDL1Q96EA4 605 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 PRICKLE1Q96MT3 831 aaPredicted RBP11.97□□□□□ -0.49
PTPRN-204ENST00000423636 IGSF5Q9NSI5 407 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 TREX1Q9NSU2 369 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 COMMD10Q9Y6G5 202 aa11.97□□□□□ -0.49
PTPRN-204ENST00000423636 MAGEB16A2A368 324 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 LDB2O43679 373 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 NIPSNAP2O75323 286 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 RAG1P15918 1043 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 THOP1P52888 689 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 TRIP10Q15642 601 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 TMEM154Q6P9G4 183 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 CILP2Q8IUL8 1156 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 PIANPQ8IYJ0 282 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 CLDN19Q8N6F1 224 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 TSGA13Q96PP4 275 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 HIPK3Q9H422 1215 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 TMEM161AQ9NX61 479 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 COPG1Q9Y678 874 aaKnown RBP11.96□□□□□ -0.49
PTPRN-204ENST00000423636 MIA3Q5JRA6 1907 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 CDC7O00311 574 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 MATN2O00339 956 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 HDAC3O15379 428 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 EOMESO95936 686 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 ATXN1LP0C7T5 689 aaKnown RBP11.96□□□□□ -0.49
PTPRN-204ENST00000423636 LINC00032P0C843 101 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 GFAPP14136 432 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 RHOQP17081 205 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 CA5AP35218 305 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 GGT5P36269 586 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 ATP5C1P36542 298 aaKnown RBP11.96□□□□□ -0.49
PTPRN-204ENST00000423636 MS4A2Q01362 244 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 SERINC3Q13530 473 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 HNRNPDQ14103 355 aaKnown RBP11.96□□□□□ -0.49
PTPRN-204ENST00000423636 AGKQ53H12 422 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 WASHC2DQ5SRD0 308 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 PAOXQ6QHF9 649 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 PAQR3Q6TCH7 311 aa11.96□□□□□ -0.49
PTPRN-204ENST00000423636 IFNEQ86WN2 208 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms