RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 PRPSAP1Q14558 356 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 FKBP1CQ5VVH2 108 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 LARP4Q71RC2 724 aaKnown RBP eCLIP10.75□□□□□ -0.69
USP54-204ENST00000422491 RPS27LQ71UM5 84 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 STRADAQ7RTN6 431 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 CUZD1Q86UP6 607 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 PARP8Q8N3A8 854 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 MINDY1Q8N5J2 469 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 ZNF668Q96K58 619 aaPredicted RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 HOPXQ9BPY8 73 aaPredicted RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 APOL2Q9BQE5 337 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 BEGAINQ9BUH8 593 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 FBRSL1Q9HCM7 1045 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 TMPRSS4Q9NRS4 437 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 CMTM6Q9NX76 183 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 BPTFQ12830 3046 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 EIF2S1P05198 315 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 ALDOCP09972 364 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 STAG3L1P0CL83 205 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 TPH1P17752 444 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 KCNA5P22460 613 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 EEF1B2P24534 225 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 LEPRP48357 1165 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 STAT5BP51692 787 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 C6orf183Q5T699 404 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 SLC16A12Q6ZSM3 486 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 ACOT1Q86TX2 421 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 FAM83AQ86UY5 434 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 NRBF2Q96F24 287 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 MUS81Q96NY9 551 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 WDR12Q9GZL7 423 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 FAM124BQ9H5Z6 455 aaPredicted RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 IL1RL2Q9HB29 575 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 HMG20AQ9NP66 347 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 TRPV5Q9NQA5 729 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 SETD4Q9NVD3 440 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 INTS10Q9NVR2 710 aaKnown RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 ZNF219Q9P2Y4 722 aaPredicted RBP10.75□□□□□ -0.69
USP54-204ENST00000422491 TNFSF13BQ9Y275 285 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 NME7Q9Y5B8 376 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 LCTP09848 1927 aa10.75□□□□□ -0.69
USP54-204ENST00000422491 TCRBV5S2A0A599 114 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 ERI2A8K979 691 aaKnown RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 FAM47E-STBD1D6RA91 191 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 INO80B-WBP1J3KQ70 363 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 ZBTB24O43167 697 aaPredicted RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 BCAS1O75363 584 aaPredicted RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 NCAM1P13591 858 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 STMN1P16949 149 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 PTPN2P17706 415 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 GSTM2P28161 218 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 SHMT2P34897 504 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 PRMT9Q6P2P2 845 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 TBPL2Q6SJ96 375 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 PIWIL3Q7Z3Z3 882 aaKnown RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 TFAP2DQ7Z6R9 452 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 FAM35AQ86V20 835 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 ANKRD13BQ86YJ7 626 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 CNTN4Q8IWV2 1026 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 TTC30BQ8N4P2 665 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 AFAP1L2Q8N4X5 818 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 TTC39CQ8N584 583 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 C7orf31Q8N865 590 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 PAPD5Q8NDF8 572 aaKnown RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 HEXDCQ8WVB3 486 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 CPB2Q96IY4 423 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 NSMCE3Q96MG7 304 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 GMIPQ9P107 970 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 ANKMY1Q9P2S6 941 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 VPS51Q9UID3 782 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 ZNF214Q9UL59 606 aaPredicted RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 ERVK-11Q9UQG0 969 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 DGKBQ9Y6T7 804 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 FAM95CA0A1B0GW59 222 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 FARP2O94887 1054 aaPredicted RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 MT-CO1P00395 513 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 GJB1P08034 283 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 IQCF3P0C7M6 154 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 SLC6A2P23975 617 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 EEF1DP29692 281 aaKnown RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 RCVRNP35243 200 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 RAD23AP54725 363 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 SELENBP1Q13228 472 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 CYP51A1Q16850 503 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 TMEM132AQ24JP5 1023 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 Q3C1V9 767 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 INAVAQ3KP66 663 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 UGT3A2Q3SY77 523 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 DNAJC14Q6Y2X3 702 aaPredicted RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 IFNLR1Q8IU57 520 aaPredicted RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 SNX29P2Q8IUI4 249 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 DENND6AQ8IWF6 608 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 SGCDQ92629 289 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 KIFC1Q9BW19 673 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 KLHL25Q9H0H3 589 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 MINDY3Q9H8M7 445 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 SIAEQ9HAT2 523 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 EML4Q9HC35 981 aaKnown RBP10.74□□□□□ -0.69
USP54-204ENST00000422491 CYP4F12Q9HCS2 524 aa10.74□□□□□ -0.69
USP54-204ENST00000422491 SCUBE2Q9NQ36 999 aa10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms