RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 SP110Q9HB58 689 aa11.64□□□□□ -0.55
USP4-204ENST00000416417 FGF22Q9HCT0 170 aa11.64□□□□□ -0.55
USP4-204ENST00000416417 ETNK2Q9NVF9 386 aa11.64□□□□□ -0.55
USP4-204ENST00000416417 CWC15Q9P013 229 aaKnown RBP11.64□□□□□ -0.55
USP4-204ENST00000416417 TMEM63CQ9P1W3 806 aa11.64□□□□□ -0.55
USP4-204ENST00000416417 MOSPD1Q9UJG1 213 aa11.64□□□□□ -0.55
USP4-204ENST00000416417 ATXN7L1Q9ULK2 861 aaPredicted RBP11.64□□□□□ -0.55
USP4-204ENST00000416417 TEX51A0A1B0GUA7 166 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 A0A1W2PQM1 296 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 DDX3XO00571 662 aaKnown RBP eCLIP11.63□□□□□ -0.552e-8■■■■□ 21
USP4-204ENST00000416417 NTN3O00634 580 aaPredicted RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 RPLP0P05388 317 aaKnown RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 HTR1BP28222 390 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 SERPINA4P29622 427 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 PEX5P50542 639 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 TMPRSS3P57727 454 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 BCL2L1Q07817 233 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 SLC10A7Q0GE19 358 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 SRSF6Q13247 344 aaKnown RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 LY6DQ14210 128 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 SMTNL2Q2TAL5 461 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 TAF1BQ53T94 588 aaPredicted RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 CCDC183Q5T5S1 534 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 KIAA1614Q5VZ46 1190 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 DENND2CQ68D51 928 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 BRAT1Q6PJG6 821 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 FSTL5Q8N475 847 aaPredicted RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 ARL10Q8N8L6 244 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 NAT6Q93015 286 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 ZNF653Q96CK0 615 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 TBATAQ96M53 351 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 ZNF641Q96N77 438 aaPredicted RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 GBP4Q96PP9 640 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 TUBGCP5Q96RT8 1024 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 SEMA4CQ9C0C4 833 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 TMEM168Q9H0V1 697 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 ZWILCHQ9H900 591 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 RTN4Q9NQC3 1192 aaKnown RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 CNOT8Q9UFF9 292 aaKnown RBP11.63□□□□□ -0.55
USP4-204ENST00000416417 PTPRQQ9UMZ3 2332 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 ATMQ13315 3056 aa11.63□□□□□ -0.55
USP4-204ENST00000416417 TMEM110-MUSTN1A8MSY1 372 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 B4DGG1 531 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 PRPSAP2O60256 369 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 LRCH4O75427 683 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 RNF8O76064 485 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 TNFP01375 233 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 ALPIP09923 528 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 ELFN1P0C7U0 828 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 CCDC172P0C7W6 258 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 DESP17661 470 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 AMPD1P23109 780 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 IL1R2P27930 398 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 BLKP51451 505 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 MTM1Q13496 603 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 ACOX1Q15067 660 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 ZSCAN23Q3MJ62 389 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 TXNRD3NBQ6F5E7 133 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 TAF8Q7Z7C8 310 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 GKN2Q86XP6 184 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 PGBD5Q8N414 524 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 FAM46DQ8NEK8 389 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 TPCN2Q8NHX9 752 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 WDR36Q8NI36 951 aaKnown RBP11.62□□□□□ -0.55
USP4-204ENST00000416417 HCAR2Q8TDS4 363 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 PDCD6IPQ8WUM4 868 aaKnown RBP11.62□□□□□ -0.55
USP4-204ENST00000416417 PTCD2Q8WV60 388 aaKnown RBP11.62□□□□□ -0.55
USP4-204ENST00000416417 SCG3Q8WXD2 468 aaKnown RBP11.62□□□□□ -0.55
USP4-204ENST00000416417 HSPH1Q92598 858 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 BTBD6Q96KE9 485 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 NAP1L5Q96NT1 182 aaPredicted RBP11.62□□□□□ -0.55
USP4-204ENST00000416417 SMIM14Q96QK8 99 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 GFM1Q96RP9 751 aaKnown RBP11.62□□□□□ -0.55
USP4-204ENST00000416417 B4GALT6Q9UBX8 382 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 PCDHGC4Q9Y5F7 938 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 ANKRD36A6QL64 1941 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 RP1P56715 2156 aa11.62□□□□□ -0.55
USP4-204ENST00000416417 CCDC187A0A096LP49 1063 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 CDRT15L2A8MXV6 281 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 PYCARD-AS1I3L0S3 204 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 TRAFD1O14545 582 aaPredicted RBP11.61□□□□□ -0.55
USP4-204ENST00000416417 TOR1BO14657 336 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 TCEA3O75764 348 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 HTR7P34969 479 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 CSNK1DP48730 415 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 SUOXP51687 545 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 MAXP61244 160 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 CFHR1Q03591 330 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 IL10RBQ08334 325 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 CLN3Q13286 438 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 DPYSQ14117 519 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 LBRQ14739 615 aaKnown RBP11.61□□□□□ -0.55
USP4-204ENST00000416417 GRM3Q14832 879 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 TGIF1Q15583 401 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 DPPA4Q7L190 304 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 TMPRSS9Q7Z410 1059 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 JAMLQ86YT9 394 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 OR56A4Q8NGH8 313 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 ECHDC3Q96DC8 303 aa11.61□□□□□ -0.55
USP4-204ENST00000416417 RBM15Q96T37 977 aaKnown RBP eCLIP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms