RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 PDCD6IPQ8WUM4 868 aaKnown RBP19.15■□□□□ 0.66
SF3A1-202ENST00000411423 SPOCK2Q92563 424 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 LCMT1Q9UIC8 334 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 INTUQ9ULD6 942 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 OR1A2Q9Y585 309 aa19.15■□□□□ 0.66
SF3A1-202ENST00000411423 LRRD1A4D1F6 860 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 TAF4O00268 1085 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 SCAMP1O15126 338 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 MATN3O15232 486 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 LZTS3O60299 673 aaPredicted RBP19.14■□□□□ 0.65
SF3A1-202ENST00000411423 FZD6O60353 706 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 SOCS5O75159 536 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 CPP00450 1065 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 COMTP21964 271 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 ACP1P24666 158 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 HNRNPKP61978 463 aaKnown RBP eCLIP19.14■□□□□ 0.65
SF3A1-202ENST00000411423 YPEL5P62699 121 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 NIPAL4Q0D2K0 466 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 C1orf61Q13536 156 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 CNGA3Q16281 694 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 MACC1Q6ZN28 852 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 PHACTR4Q8IZ21 702 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.14■□□□□ 0.65
SF3A1-202ENST00000411423 TSGA13Q96PP4 275 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 SEMA3CQ99985 751 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 APOOQ9BUR5 198 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 C1QTNF7Q9BXJ2 289 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 CLPBQ9H078 707 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 SALL4Q9UJQ4 1053 aa19.14■□□□□ 0.65
SF3A1-202ENST00000411423 LRP4O75096 1905 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 CFAP69A5D8W1 941 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 NPIPB15A6NHN6 443 aaPredicted RBP19.13■□□□□ 0.65
SF3A1-202ENST00000411423 PGLSO95336 258 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 HLA-DQB2P05538 268 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 ELFN1P0C7U0 828 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 TNNT1P13805 278 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 CCNCP24863 283 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 MAGEA1P43355 309 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 IFI16Q16666 785 aaKnown RBP19.13■□□□□ 0.65
SF3A1-202ENST00000411423 ALG11Q2TAA5 492 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 ZFYVE27Q5T4F4 411 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 SLC9A4Q6AI14 798 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 ALG1LQ6GMV1 187 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 B4GALNT4Q76KP1 1039 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 TSPAN33Q86UF1 283 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 LRRC49Q8IUZ0 686 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 MAP7D3Q8IWC1 876 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 CBARPQ8N350 705 aaPredicted RBP19.13■□□□□ 0.65
SF3A1-202ENST00000411423 ARRDC2Q8TBH0 407 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 LMX1AQ8TE12 382 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 PIH1D2Q8WWB5 315 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 RNF25Q96BH1 459 aaPredicted RBP19.13■□□□□ 0.65
SF3A1-202ENST00000411423 HDAC11Q96DB2 347 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 MRFAP1L1Q96HT8 127 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 APOLD1Q96LR9 279 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 COQ10AQ96MF6 247 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 LGMNQ99538 433 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 LRRC61Q9BV99 259 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 NLGN3Q9NZ94 848 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 IGF2RP11717 2491 aa19.13■□□□□ 0.65
SF3A1-202ENST00000411423 RCCD1A6NED2 376 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 SOWAHDA6NJG2 315 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 AQP9O43315 295 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 KRT1P04264 644 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 ALPIP09923 528 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 CTPS1P17812 591 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 FECHP22830 423 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 THOP1P52888 689 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 ZBTB17Q13105 803 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 DEFB133Q30KQ1 61 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 MFSD7Q6UXD7 560 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 RFLNAQ6ZTI6 216 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 HSD11B1LQ7Z5J1 315 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 BBS5Q8N3I7 341 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 NSMCE1Q8WV22 266 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 ZCCHC14Q8WYQ9 949 aaKnown RBP19.12■□□□□ 0.65
SF3A1-202ENST00000411423 FATE1Q969F0 183 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 TSACCQ96A04 125 aaPredicted RBP19.12■□□□□ 0.65
SF3A1-202ENST00000411423 RBM22Q9NW64 420 aaKnown RBP eCLIP19.12■□□□□ 0.65
SF3A1-202ENST00000411423 APOBEC3BQ9UH17 382 aaKnown RBP19.12■□□□□ 0.65
SF3A1-202ENST00000411423 REXO2Q9Y3B8 237 aaKnown RBP19.12■□□□□ 0.65
SF3A1-202ENST00000411423 PCDHA13Q9Y5I0 950 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 RAI2Q9Y5P3 530 aa19.12■□□□□ 0.65
SF3A1-202ENST00000411423 ZNF487B1APH4 448 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 CASC3O15234 703 aaKnown RBP19.11■□□□□ 0.65
SF3A1-202ENST00000411423 HEXIM1O94992 359 aaKnown RBP19.11■□□□□ 0.65
SF3A1-202ENST00000411423 PRLP01236 227 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 MMP2P08253 660 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 CKMT1AP12532 417 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 CCNB1P14635 433 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 VIPR1P32241 457 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 MARCKSL1P49006 195 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 HADHBP55084 474 aaKnown RBP19.11■□□□□ 0.65
SF3A1-202ENST00000411423 POLR2LP62875 67 aaKnown RBP19.11■□□□□ 0.65
SF3A1-202ENST00000411423 INSM1Q01101 510 aaPredicted RBP19.11■□□□□ 0.65
SF3A1-202ENST00000411423 ITKQ08881 620 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 MTM1Q13496 603 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 PTK2BQ14289 1009 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 NFATC4Q14934 902 aa19.11■□□□□ 0.65
SF3A1-202ENST00000411423 LLGL1Q15334 1064 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 243.2 ms