RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CES5AQ6NT32 575 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 FAM173BQ6P4H8 233 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 DPY19L3Q6ZPD9 716 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 CDR2LQ86X02 465 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 CEP57L1Q8IYX8 460 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 CCDC150Q8NCX0 1101 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 CCDC47Q96A33 483 aaKnown RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 MCRS1Q96EZ8 462 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 TSPAN18Q96SJ8 248 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 KIFC3Q9BVG8 833 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 SCAND2PQ9GZW5 306 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 MRPL44Q9H9J2 332 aaKnown RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 POLD4Q9HCU8 107 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.72□□□□□ -1.33
USP40-202ENST00000409945 TM7SF3Q9NS93 570 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 TMEM74BQ9NUR3 256 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 CD207Q9UJ71 328 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 PRG3Q9Y2Y8 225 aaPredicted RBP6.72□□□□□ -1.33
USP40-202ENST00000409945 HES2Q9Y543 173 aa6.72□□□□□ -1.33
USP40-202ENST00000409945 KIAA1671Q9BY89 1806 aa6.71□□□□□ -1.33
USP40-202ENST00000409945 ARHGEF37A1IGU5 675 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 CTSAP10619 480 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 KLRC2P26717 231 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 PPIFP30405 207 aaKnown RBP6.71□□□□□ -1.34
USP40-202ENST00000409945 LRPAP1P30533 357 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 UQCRC1P31930 480 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 PBX3P40426 434 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 SLC11A1P49279 550 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 GLUD2P49448 558 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 TFF2Q03403 129 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 HYAL1Q12794 435 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 USP41Q3LFD5 358 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 FAXCQ5TGI0 409 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 CD302Q8IX05 232 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 SYCP3Q8IZU3 236 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 PDILTQ8N807 584 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 MRPL43Q8N983 215 aaKnown RBP6.71□□□□□ -1.34
USP40-202ENST00000409945 TMEM161BQ8NDZ6 487 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 SCAMP5Q8TAC9 235 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 CACTINQ8WUQ7 758 aaKnown RBP6.71□□□□□ -1.34
USP40-202ENST00000409945 SLC25A43Q8WUT9 341 aaPredicted RBP6.71□□□□□ -1.34
USP40-202ENST00000409945 FAM136AQ96C01 138 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 BOD1Q96IK1 185 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 PLEKHG4BQ96PX9 1271 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 TNMDQ9H2S6 317 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 GALNT9Q9HCQ5 603 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 ZSCAN32Q9NX65 697 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 DNAJB4Q9UDY4 337 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 ADAM28Q9UKQ2 775 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 RIMKLBQ9ULI2 386 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 TBX20Q9UMR3 447 aa6.71□□□□□ -1.34
USP40-202ENST00000409945 TDRD15B5MCY1 1934 aaKnown RBP6.71□□□□□ -1.34
USP40-202ENST00000409945 TRGV11A0A075B6L2 103 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 GAGE12BA1L429 117 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 GAGE12HA6NDE8 117 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 H3BQ06 376 aaPredicted RBP6.7□□□□□ -1.34
USP40-202ENST00000409945 DNPH1O43598 174 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 CBFA2T3O75081 653 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 DDHD2O94830 711 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 CLTAP09496 248 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 DNAJB1P25685 340 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 LIPAP38571 399 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 ZNF131P52739 623 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 OSTNP61366 133 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 ITIH3Q06033 890 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 MAPK7Q13164 816 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 DUSP6Q16828 381 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 HERC4Q5GLZ8 1057 aaPredicted RBP6.7□□□□□ -1.34
USP40-202ENST00000409945 LCE4AQ5TA78 99 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 FNDC7Q5VTL7 733 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 SP5Q6BEB4 398 aaPredicted RBP6.7□□□□□ -1.34
USP40-202ENST00000409945 COLGALT2Q8IYK4 626 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 GPR65Q8IYL9 337 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 SPARTQ8N0X7 666 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 DAW1Q8N136 415 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 PTCD3Q96EY7 689 aaKnown RBP6.7□□□□□ -1.34
USP40-202ENST00000409945 NECTIN4Q96NY8 510 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 ACCSQ96QU6 501 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 HAPLN3Q96S86 360 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 PRPF18Q99633 342 aaKnown RBP6.7□□□□□ -1.34
USP40-202ENST00000409945 PANK2Q9BZ23 570 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 ZBP1Q9H171 429 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 CDT1Q9H211 546 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 ZNF703Q9H7S9 590 aaPredicted RBP6.7□□□□□ -1.34
USP40-202ENST00000409945 TMEM206Q9H813 350 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 RPF1Q9H9Y2 349 aaKnown RBP6.7□□□□□ -1.34
USP40-202ENST00000409945 PLEKHA5Q9HAU0 1116 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 TMEM8AQ9HCN3 771 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 BLOC1S4Q9NUP1 217 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 INTS13Q9NVM9 706 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 DTNAQ9Y4J8 743 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 NOX1Q9Y5S8 564 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 A0A0C4DFX4 3053 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 TMEM200CA6NKL6 621 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 B9A039 149 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 FCHO1O14526 889 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 PER2O15055 1255 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 OGTO15294 1046 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 GCNT3O95395 438 aa6.7□□□□□ -1.34
USP40-202ENST00000409945 FESP07332 822 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms