RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 CDKL3Q8IVW4 592 aaPredicted RBP13.03□□□□□ -0.32
PTPRN-202ENST00000409251 SMG8Q8ND04 991 aaKnown RBP13.03□□□□□ -0.32
PTPRN-202ENST00000409251 ADAM2Q99965 735 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 ADI1Q9BV57 179 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 CHRAC1Q9NRG0 131 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 ABCB10Q9NRK6 738 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 EVLQ9UI08 416 aaPredicted RBP13.03□□□□□ -0.32
PTPRN-202ENST00000409251 TBC1D30Q9Y2I9 924 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 FADS3Q9Y5Q0 445 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 TRIM38O00635 465 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 DLGAP3O95886 979 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 SLC4A1P02730 911 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 FCGRTP55899 365 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 PAGE2BQ5JRK9 111 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 OSTM1Q86WC4 334 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 PGAM4Q8N0Y7 254 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 RP9Q8TA86 221 aaKnown RBP13.03□□□□□ -0.32
PTPRN-202ENST00000409251 RAET1EQ8TD07 263 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 SGCDQ92629 289 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 SDCCAG3Q96C92 435 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 FAM96AQ9H5X1 160 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 PKD2L2Q9NZM6 624 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 PCDHB12Q9Y5F1 795 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 ARID2Q68CP9 1835 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 TTC3P53804 2025 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 FAM159BA6NKW6 160 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 CNOT3O75175 753 aaKnown RBP13.03□□□□□ -0.32
PTPRN-202ENST00000409251 SRP72O76094 671 aaKnown RBP13.03□□□□□ -0.32
PTPRN-202ENST00000409251 KRT75O95678 551 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 ZNF26P17031 533 aaPredicted RBP13.03□□□□□ -0.32
PTPRN-202ENST00000409251 GSSP48637 474 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 BCAT1P54687 386 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 STX1BP61266 288 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 CNPY3Q9BT09 278 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 BFARQ9NZS9 450 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 IGSF9Q9P2J2 1179 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 PADI3Q9ULW8 664 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 SNX10Q9Y5X0 201 aa13.03□□□□□ -0.32
PTPRN-202ENST00000409251 SMIM35A0A1B0GVV1 85 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 MYBPHLA2RUH7 354 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 NT5C1B-RDH14C9J2C7 533 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 TADA2AO75478 443 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 BAIAP3O94812 1187 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 CHRNA1P02708 482 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 HSPA8P11142 646 aaKnown RBP13.02□□□□□ -0.32
PTPRN-202ENST00000409251 LILRA4P59901 499 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 PRKCQQ04759 706 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 TRIM25Q14258 630 aaKnown RBP13.02□□□□□ -0.32
PTPRN-202ENST00000409251 POU6F1Q14863 301 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 SCIMPQ6UWF3 145 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 ZNF354CQ86Y25 554 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 C3orf58Q8NDZ4 430 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 PSMA8Q8TAA3 256 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 TMEM174Q8WUU8 243 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 GLMNQ92990 594 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 BCO2Q9BYV7 579 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 EPB41L1Q9H4G0 881 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 HCSTQ9UBK5 93 aa13.02□□□□□ -0.32
PTPRN-202ENST00000409251 PRPF19Q9UMS4 504 aaKnown RBP13.02□□□□□ -0.32
PTPRN-202ENST00000409251 UBQLN1Q9UMX0 589 aaKnown RBP13.02□□□□□ -0.32
PTPRN-202ENST00000409251 ITGB1P05556 798 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 IL10P22301 178 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 TAF6P49848 677 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 CLCQ05315 142 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 MADCAM1Q13477 382 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 APOFQ13790 326 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 THOC7Q6I9Y2 204 aaKnown RBP13.02□□□□□ -0.33
PTPRN-202ENST00000409251 HFE2Q6ZVN8 426 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 ZNF467Q7Z7K2 595 aaPredicted RBP13.02□□□□□ -0.33
PTPRN-202ENST00000409251 HTR3CQ8WXA8 447 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 LRCH3Q96II8 777 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 LTB4R2Q9NPC1 389 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 SLC8A2Q9UPR5 921 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 PTGESO14684 152 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 UBDO15205 165 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 SUPT7LO94864 414 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 MFN2O95140 757 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 NR4A2P43354 598 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 FAM83EQ2M2I3 478 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 CHERPQ8IWX8 916 aaKnown RBP13.02□□□□□ -0.33
PTPRN-202ENST00000409251 RNF145Q96MT1 663 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 CCDC68Q9H2F9 335 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 LRRC4Q9HBW1 653 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 FAM105AQ9NUU6 356 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 PTGDR2Q9Y5Y4 395 aa13.02□□□□□ -0.33
PTPRN-202ENST00000409251 KRBA1A5PL33 1030 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 MGEA5O60502 916 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 MYO1DO94832 1006 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 PFKMP08237 780 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 SLC10A3P09131 477 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 IL7RP16871 459 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 SLC13A2Q13183 592 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 SF3B4Q15427 424 aaKnown RBP eCLIP13.01□□□□□ -0.33
PTPRN-202ENST00000409251 ZNF829Q3KNS6 432 aaPredicted RBP13.01□□□□□ -0.33
PTPRN-202ENST00000409251 DCAF4L1Q3SXM0 396 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 VPS26BQ4G0F5 336 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 UBXN11Q5T124 520 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 DHRSXQ8N5I4 330 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 C17orf50Q8WW18 174 aa13.01□□□□□ -0.33
PTPRN-202ENST00000409251 RNF34Q969K3 372 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms